Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15n14
(356 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D50857-1|BAA09454.1| 1865|Homo sapiens DOCK180 protein protein. 29 3.2
BX470201-1|CAH72560.2| 1865|Homo sapiens dedicator of cytokinesi... 29 3.2
BX470155-1|CAI22477.2| 1865|Homo sapiens dedicator of cytokinesi... 29 3.2
AL607029-1|CAI15329.2| 1865|Homo sapiens dedicator of cytokinesi... 29 3.2
AL390920-1|CAH73231.2| 1865|Homo sapiens dedicator of cytokinesi... 29 3.2
AL359094-1|CAH71477.2| 1865|Homo sapiens dedicator of cytokinesi... 29 3.2
AL355316-1|CAI16871.2| 1865|Homo sapiens dedicator of cytokinesi... 29 3.2
AL157711-1|CAH71463.2| 1865|Homo sapiens dedicator of cytokinesi... 29 3.2
X12794-1|CAA31282.1| 403|Homo sapiens protein ( Human v-erbA re... 28 7.4
AB065513-1|BAC05761.1| 319|Homo sapiens seven transmembrane hel... 28 7.4
AB065512-1|BAC05760.1| 288|Homo sapiens seven transmembrane hel... 28 7.4
BC084544-1|AAH84544.2| 404|Homo sapiens nuclear receptor subfam... 28 9.8
BC063894-1|AAH63894.1| 816|Homo sapiens DENND2C protein protein. 28 9.8
BC063018-1|AAH63018.2| 404|Homo sapiens nuclear receptor subfam... 28 9.8
BC002669-1|AAH02669.3| 404|Homo sapiens nuclear receptor subfam... 28 9.8
AL133382-2|CAI19301.1| 871|Homo sapiens DENN/MADD domain contai... 28 9.8
AL133382-1|CAM27633.1| 928|Homo sapiens DENN/MADD domain contai... 28 9.8
>D50857-1|BAA09454.1| 1865|Homo sapiens DOCK180 protein protein.
Length = 1865
Score = 29.5 bits (63), Expect = 3.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 181 EGYVKCFWSLCDRHNSIDNFTE 116
E Y++ + LCD H DN+TE
Sbjct: 1214 EMYIRYLYKLCDLHKECDNYTE 1235
>BX470201-1|CAH72560.2| 1865|Homo sapiens dedicator of cytokinesis 1
protein.
Length = 1865
Score = 29.5 bits (63), Expect = 3.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 181 EGYVKCFWSLCDRHNSIDNFTE 116
E Y++ + LCD H DN+TE
Sbjct: 1214 EMYIRYLYKLCDLHKECDNYTE 1235
>BX470155-1|CAI22477.2| 1865|Homo sapiens dedicator of cytokinesis 1
protein.
Length = 1865
Score = 29.5 bits (63), Expect = 3.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 181 EGYVKCFWSLCDRHNSIDNFTE 116
E Y++ + LCD H DN+TE
Sbjct: 1214 EMYIRYLYKLCDLHKECDNYTE 1235
>AL607029-1|CAI15329.2| 1865|Homo sapiens dedicator of cytokinesis 1
protein.
Length = 1865
Score = 29.5 bits (63), Expect = 3.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 181 EGYVKCFWSLCDRHNSIDNFTE 116
E Y++ + LCD H DN+TE
Sbjct: 1214 EMYIRYLYKLCDLHKECDNYTE 1235
>AL390920-1|CAH73231.2| 1865|Homo sapiens dedicator of cytokinesis 1
protein.
Length = 1865
Score = 29.5 bits (63), Expect = 3.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 181 EGYVKCFWSLCDRHNSIDNFTE 116
E Y++ + LCD H DN+TE
Sbjct: 1214 EMYIRYLYKLCDLHKECDNYTE 1235
>AL359094-1|CAH71477.2| 1865|Homo sapiens dedicator of cytokinesis 1
protein.
Length = 1865
Score = 29.5 bits (63), Expect = 3.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 181 EGYVKCFWSLCDRHNSIDNFTE 116
E Y++ + LCD H DN+TE
Sbjct: 1214 EMYIRYLYKLCDLHKECDNYTE 1235
>AL355316-1|CAI16871.2| 1865|Homo sapiens dedicator of cytokinesis 1
protein.
Length = 1865
Score = 29.5 bits (63), Expect = 3.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 181 EGYVKCFWSLCDRHNSIDNFTE 116
E Y++ + LCD H DN+TE
Sbjct: 1214 EMYIRYLYKLCDLHKECDNYTE 1235
>AL157711-1|CAH71463.2| 1865|Homo sapiens dedicator of cytokinesis 1
protein.
Length = 1865
Score = 29.5 bits (63), Expect = 3.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 181 EGYVKCFWSLCDRHNSIDNFTE 116
E Y++ + LCD H DN+TE
Sbjct: 1214 EMYIRYLYKLCDLHKECDNYTE 1235
>X12794-1|CAA31282.1| 403|Homo sapiens protein ( Human v-erbA
related ear-2 gene. ).
Length = 403
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 274 MFTKSQCNHYFKPIVRRLGSYRTKDEYDCYVE 179
+FT C +FK +RR SY + DC ++
Sbjct: 70 VFTCEGCKSFFKRTIRRNLSYTCRSNRDCQID 101
>AB065513-1|BAC05761.1| 319|Homo sapiens seven transmembrane helix
receptor protein.
Length = 319
Score = 28.3 bits (60), Expect = 7.4
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = +2
Query: 20 FLF*KYYFKVPMCFARPFLLPRFLCYDFLIAFFCEVVDAVMSVTETPKTFNVAFHITIVF 199
F F +PMCFA+ + + F C + I F C VD +++ + ++ +T F
Sbjct: 91 FWFDAKAISLPMCFAQIYAIHCFFCIESGI-FLCMAVDRYIAICRPLQYPSI---VTKAF 146
Query: 200 VFSS 211
VF +
Sbjct: 147 VFKA 150
>AB065512-1|BAC05760.1| 288|Homo sapiens seven transmembrane helix
receptor protein.
Length = 288
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 20 FLF*KYYFKVPMCFARPFLLPRFLCYDFLIAFFCEVVDAVMSV 148
F F +P CFA+ + + F+C + I F C VD M++
Sbjct: 85 FWFDAKAISLPECFAQIYAIHSFMCMESGI-FLCMAVDRYMAI 126
>BC084544-1|AAH84544.2| 404|Homo sapiens nuclear receptor subfamily
2, group F, member 6 protein.
Length = 404
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 274 MFTKSQCNHYFKPIVRRLGSYRTKDEYDCYVE 179
+FT C +FK +RR SY + DC ++
Sbjct: 70 VFTCEGCKSFFKRSIRRNLSYTCRSNRDCQID 101
>BC063894-1|AAH63894.1| 816|Homo sapiens DENND2C protein protein.
Length = 816
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = -2
Query: 181 EGYVKCFWSLCDRHNSIDNFTEKRNEKIITKEPRKQEWPCKTHRDFKIIFLE 26
E +V+ F L H S++ +R E++ +EP ++ ++ R F +F+E
Sbjct: 708 EAFVRFFVELVG-HYSLNMTVTERGERVFQREPFRKSHTSRSVRHFLDLFME 758
>BC063018-1|AAH63018.2| 404|Homo sapiens nuclear receptor subfamily
2, group F, member 6 protein.
Length = 404
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 274 MFTKSQCNHYFKPIVRRLGSYRTKDEYDCYVE 179
+FT C +FK +RR SY + DC ++
Sbjct: 70 VFTCEGCKSFFKRSIRRNLSYTCRSNRDCQID 101
>BC002669-1|AAH02669.3| 404|Homo sapiens nuclear receptor subfamily
2, group F, member 6 protein.
Length = 404
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 274 MFTKSQCNHYFKPIVRRLGSYRTKDEYDCYVE 179
+FT C +FK +RR SY + DC ++
Sbjct: 70 VFTCEGCKSFFKRSIRRNLSYTCRSNRDCQID 101
>AL133382-2|CAI19301.1| 871|Homo sapiens DENN/MADD domain
containing 2C protein.
Length = 871
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = -2
Query: 181 EGYVKCFWSLCDRHNSIDNFTEKRNEKIITKEPRKQEWPCKTHRDFKIIFLE 26
E +V+ F L H S++ +R E++ +EP ++ ++ R F +F+E
Sbjct: 763 EAFVRFFVELVG-HYSLNMTVTERGERVFQREPFRKSHTSRSVRHFLDLFME 813
>AL133382-1|CAM27633.1| 928|Homo sapiens DENN/MADD domain
containing 2C protein.
Length = 928
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = -2
Query: 181 EGYVKCFWSLCDRHNSIDNFTEKRNEKIITKEPRKQEWPCKTHRDFKIIFLE 26
E +V+ F L H S++ +R E++ +EP ++ ++ R F +F+E
Sbjct: 820 EAFVRFFVELVG-HYSLNMTVTERGERVFQREPFRKSHTSRSVRHFLDLFME 870
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,830,424
Number of Sequences: 237096
Number of extensions: 801395
Number of successful extensions: 1646
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1646
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2133208582
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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