Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15n09
         (816 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po...    76   7e-15
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...    75   9e-15

>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 75.8 bits (178), Expect = 7e-15
 Identities = 38/57 (66%), Positives = 45/57 (78%)
 Frame = -2

Query: 794 RXAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMQGDGESADAEQKEPAQD 624
           + AFD+AI+ELD+LSEESYKDSTLIMQLLRDNLTLWTSD +    +A     E AQ+
Sbjct: 198 KQAFDEAISELDSLSEESYKDSTLIMQLLRDNLTLWTSDAEYSAAAAGG-NTEGAQE 253


>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 75.4 bits (177), Expect = 9e-15
 Identities = 38/61 (62%), Positives = 47/61 (77%)
 Frame = -2

Query: 794 RXAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMQGDGESADAEQKEPAQDGED 615
           +  FD+AI+ELD+LSEESYKDSTLIMQLLRDNLTLWTSD + + +SA  E    A   E+
Sbjct: 197 KQVFDEAISELDSLSEESYKDSTLIMQLLRDNLTLWTSDAEYN-QSAKEEAPAAAAASEN 255

Query: 614 Q 612
           +
Sbjct: 256 E 256


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,565,092
Number of Sequences: 5004
Number of extensions: 44581
Number of successful extensions: 108
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)