Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15n03
         (876 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR457300-1|CAG33581.1|  340|Homo sapiens SRR protein.                  46   2e-04
BC074728-1|AAH74728.1|  340|Homo sapiens serine racemase protein.      46   2e-04
AY034081-1|AAK58495.1|  340|Homo sapiens serine racemase protein.      46   2e-04
AL834378-1|CAD39041.1|  288|Homo sapiens hypothetical protein pr...    46   2e-04
AK023169-1|BAB14442.1|  340|Homo sapiens protein ( Homo sapiens ...    46   2e-04
AF169974-1|AAG27081.1|  340|Homo sapiens serine racemase protein.      46   2e-04
AK223120-1|BAD96840.1|  340|Homo sapiens serine racemase variant...    45   3e-04
AY358101-1|AAQ88468.1|   85|Homo sapiens Wpep3002 protein.             31   5.5  

>CR457300-1|CAG33581.1|  340|Homo sapiens SRR protein.
          Length = 340

 Score = 46.0 bits (104), Expect = 2e-04
 Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 3/124 (2%)
 Frame = -3

Query: 748 KHLKPDTEIYGVETDKTCSMVESLRKNERI-HLDIDSTIAEGLAVNVVGTNTFYNIKGLV 572
           K LKP  ++Y  E        +S  K + + +L    TIA+G+  ++ G NT+  I+ LV
Sbjct: 198 KALKPSVKVYAAEPSNADDCYQSKLKGKLMPNLYPPETIADGVKSSI-GLNTWPIIRDLV 256

Query: 571 DKIVVVKEDWVARAIMHIXXXXXXXXXXXXXXXXXAIMAGLFPNLKGK-KVVCII-SGGN 398
           D I  V ED +  A   +                 A+++  F  +  + K +CI+ SGGN
Sbjct: 257 DDIFTVTEDEIKCATQLVWERMKLLIEPTAGVGVAAVLSQHFQTVSPEVKNICIVLSGGN 316

Query: 397 IDVT 386
           +D+T
Sbjct: 317 VDLT 320


>BC074728-1|AAH74728.1|  340|Homo sapiens serine racemase protein.
          Length = 340

 Score = 46.0 bits (104), Expect = 2e-04
 Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 3/124 (2%)
 Frame = -3

Query: 748 KHLKPDTEIYGVETDKTCSMVESLRKNERI-HLDIDSTIAEGLAVNVVGTNTFYNIKGLV 572
           K LKP  ++Y  E        +S  K + + +L    TIA+G+  ++ G NT+  I+ LV
Sbjct: 198 KALKPSVKVYAAEPSNADDCYQSKLKGKLMPNLYPPETIADGVKSSI-GLNTWPIIRDLV 256

Query: 571 DKIVVVKEDWVARAIMHIXXXXXXXXXXXXXXXXXAIMAGLFPNLKGK-KVVCII-SGGN 398
           D I  V ED +  A   +                 A+++  F  +  + K +CI+ SGGN
Sbjct: 257 DDIFTVTEDEIKCATQLVWERMKLLIEPTAGVGVAAVLSQHFQTVSPEVKNICIVLSGGN 316

Query: 397 IDVT 386
           +D+T
Sbjct: 317 VDLT 320


>AY034081-1|AAK58495.1|  340|Homo sapiens serine racemase protein.
          Length = 340

 Score = 46.0 bits (104), Expect = 2e-04
 Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 3/124 (2%)
 Frame = -3

Query: 748 KHLKPDTEIYGVETDKTCSMVESLRKNERI-HLDIDSTIAEGLAVNVVGTNTFYNIKGLV 572
           K LKP  ++Y  E        +S  K + + +L    TIA+G+  ++ G NT+  I+ LV
Sbjct: 198 KALKPSVKVYAAEPSNADDCYQSKLKGKLMPNLYPPETIADGVKSSI-GLNTWPIIRDLV 256

Query: 571 DKIVVVKEDWVARAIMHIXXXXXXXXXXXXXXXXXAIMAGLFPNLKGK-KVVCII-SGGN 398
           D I  V ED +  A   +                 A+++  F  +  + K +CI+ SGGN
Sbjct: 257 DDIFTVTEDEIKCATQLVWERMKLLIEPTAGVGVAAVLSQHFQTVSPEVKNICIVLSGGN 316

Query: 397 IDVT 386
           +D+T
Sbjct: 317 VDLT 320


>AL834378-1|CAD39041.1|  288|Homo sapiens hypothetical protein
           protein.
          Length = 288

 Score = 46.0 bits (104), Expect = 2e-04
 Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 3/124 (2%)
 Frame = -3

Query: 748 KHLKPDTEIYGVETDKTCSMVESLRKNERI-HLDIDSTIAEGLAVNVVGTNTFYNIKGLV 572
           K LKP  ++Y  E        +S  K + + +L    TIA+G+  ++ G NT+  I+ LV
Sbjct: 146 KALKPSVKVYAAEPSNADDCYQSKLKGKLMPNLYPPETIADGVKSSI-GLNTWPIIRDLV 204

Query: 571 DKIVVVKEDWVARAIMHIXXXXXXXXXXXXXXXXXAIMAGLFPNLKGK-KVVCII-SGGN 398
           D I  V ED +  A   +                 A+++  F  +  + K +CI+ SGGN
Sbjct: 205 DDIFTVTEDEIKCATQLVWERMKLLIEPTAGVGVAAVLSQHFQTVSPEVKNICIVLSGGN 264

Query: 397 IDVT 386
           +D+T
Sbjct: 265 VDLT 268


>AK023169-1|BAB14442.1|  340|Homo sapiens protein ( Homo sapiens
           cDNA FLJ13107 fis, clone NT2RP3002501, weakly similar to
           THREONINE DEHYDRATASE CATABOLIC (EC 4.2.1.16). ).
          Length = 340

 Score = 46.0 bits (104), Expect = 2e-04
 Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 3/124 (2%)
 Frame = -3

Query: 748 KHLKPDTEIYGVETDKTCSMVESLRKNERI-HLDIDSTIAEGLAVNVVGTNTFYNIKGLV 572
           K LKP  ++Y  E        +S  K + + +L    TIA+G+  ++ G NT+  I+ LV
Sbjct: 198 KALKPSVKVYAAEPSNADDCYQSKLKGKLMPNLYPPETIADGVKSSI-GLNTWPIIRDLV 256

Query: 571 DKIVVVKEDWVARAIMHIXXXXXXXXXXXXXXXXXAIMAGLFPNLKGK-KVVCII-SGGN 398
           D I  V ED +  A   +                 A+++  F  +  + K +CI+ SGGN
Sbjct: 257 DDIFTVTEDEIKCATQLVWERMKLLIEPTAGVGVAAVLSQHFQTVSPEVKNICIVLSGGN 316

Query: 397 IDVT 386
           +D+T
Sbjct: 317 VDLT 320


>AF169974-1|AAG27081.1|  340|Homo sapiens serine racemase protein.
          Length = 340

 Score = 46.0 bits (104), Expect = 2e-04
 Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 3/124 (2%)
 Frame = -3

Query: 748 KHLKPDTEIYGVETDKTCSMVESLRKNERI-HLDIDSTIAEGLAVNVVGTNTFYNIKGLV 572
           K LKP  ++Y  E        +S  K + + +L    TIA+G+  ++ G NT+  I+ LV
Sbjct: 198 KALKPSVKVYAAEPSNADDCYQSKLKGKLMPNLYPPETIADGVKSSI-GLNTWPIIRDLV 256

Query: 571 DKIVVVKEDWVARAIMHIXXXXXXXXXXXXXXXXXAIMAGLFPNLKGK-KVVCII-SGGN 398
           D I  V ED +  A   +                 A+++  F  +  + K +CI+ SGGN
Sbjct: 257 DDIFTVTEDEIKCATQLVWERMKLLIEPTAGVGVAAVLSQHFQTVSPEVKNICIVLSGGN 316

Query: 397 IDVT 386
           +D+T
Sbjct: 317 VDLT 320


>AK223120-1|BAD96840.1|  340|Homo sapiens serine racemase variant
           protein.
          Length = 340

 Score = 45.2 bits (102), Expect = 3e-04
 Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 3/124 (2%)
 Frame = -3

Query: 748 KHLKPDTEIYGVETDKTCSMVESLRKNERI-HLDIDSTIAEGLAVNVVGTNTFYNIKGLV 572
           K LKP  ++Y  E         S  K + + +L    TIA+G+  ++ G NT+  I+ LV
Sbjct: 198 KALKPSVKVYAAEPSNADDCYRSKLKGKLMPNLYPPETIADGVKSSI-GLNTWPIIRDLV 256

Query: 571 DKIVVVKEDWVARAIMHIXXXXXXXXXXXXXXXXXAIMAGLFPNLKGK-KVVCII-SGGN 398
           D I  V ED +  A   +                 A+++  F  +  + K +CI+ SGGN
Sbjct: 257 DDIFTVTEDEIKCATQLVWERMKLLIEPTAGVGVAAVLSQHFQTVSPEVKNICIVLSGGN 316

Query: 397 IDVT 386
           +D+T
Sbjct: 317 VDLT 320


>AY358101-1|AAQ88468.1|   85|Homo sapiens Wpep3002 protein.
          Length = 85

 Score = 31.1 bits (67), Expect = 5.5
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = +1

Query: 529 WPEPPNLPLQPLFCLQDL 582
           WPEPP  PL PL CL  L
Sbjct: 2   WPEPPLGPLSPLLCLLSL 19


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,798,321
Number of Sequences: 237096
Number of extensions: 3277828
Number of successful extensions: 6634
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6609
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11159604822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)