Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15n03
         (876 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    25   0.92 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.6  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   3.7  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   3.7  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   3.7  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   3.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.5  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 315 WTVTLNFTNRPSAAIPRSNARARIVT 392
           WT T+  +N PS+AI  +N +  +V+
Sbjct: 98  WTPTVYVSNEPSSAITGNNVKDVLVS 123


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 723 ISVSGLRCFTEIPIPVNRLPPPTGYQNC 806
           +SVSG     E+  PV R PP   +  C
Sbjct: 453 LSVSGEAGIEEVKSPVLRSPPAFSHSRC 480


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 723 ISVSGLRCFTEIPIPVNRLPPPTGYQNC 806
           +SVSG     E+  PV R PP   +  C
Sbjct: 453 LSVSGEAGIEEVKSPVLRSPPAFSHSRC 480


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 680 RFYHATSFICFNTIYFSVWL 739
           RF+   SF+  N +Y+S +L
Sbjct: 364 RFFFPFSFLILNVVYWSTFL 383


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 617 KRGRNKHILQYQRSCRQNSGCKGRLGGSGHHA 522
           ++ R + I +  ++ R+N G  G  G  G HA
Sbjct: 314 RKNRFQKIAESMKTARENPGPPGVPGDHGDHA 345


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 617 KRGRNKHILQYQRSCRQNSGCKGRLGGSGHHA 522
           ++ R + I +  ++ R+N G  G  G  G HA
Sbjct: 314 RKNRFQKIAESMKTARENPGPPGVPGDHGDHA 345


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 617 KRGRNKHILQYQRSCRQNSGCKGRLGGSGHHA 522
           ++ R + I +  ++ R+N G  G  G  G HA
Sbjct: 253 RKNRFQKIAESMKTARENPGPPGVPGDHGDHA 284


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 355  AAEGRLVKFKVTVHDRPGGMAELCTLLTNSGITI 254
            AA G +  +KV V    GG+    T +T+S  TI
Sbjct: 1109 AANGVITGYKVIVIPSGGGIYTKDTKITSSSETI 1142


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 270,024
Number of Sequences: 438
Number of extensions: 6927
Number of successful extensions: 27
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)