Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15n02
         (462 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual     26   2.4  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    26   2.4  
SPCC1183.06 |ung1||uracil DNA N-glycosylase Ung1|Schizosaccharom...    26   3.2  
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    25   5.6  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    24   9.8  
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    24   9.8  

>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 435

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 75  VVEPGLELVPFQLPLDQPY 131
           + E  +ELVPFQL LD  Y
Sbjct: 101 IKENNIELVPFQLTLDYDY 119


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 332 QAHFLINTLLNSLKLSVTFGKLYP 261
           ++H L N L++ L  S T  KLYP
Sbjct: 180 RSHILFNALISILSSSSTLHKLYP 203


>SPCC1183.06 |ung1||uracil DNA N-glycosylase
           Ung1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 322

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -1

Query: 219 GMQPTHNIADTHALVTAVGTGKGLRPGMANM 127
           G  P HNI   H L  +V  G    P + N+
Sbjct: 140 GQDPYHNIGQAHGLCFSVRPGIPCPPSLVNI 170


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 158 EKGYDQVWRIWLVKGQLEWDQLEARLHNSV 69
           +KG+   W + LVKG++  D  E ++  S+
Sbjct: 370 DKGHPS-WHVTLVKGKISTDMEECKVSKSI 398


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = -1

Query: 357  EYLRHAIITSSLSHKHIAQFTKVVSHVWEIISKGRED 247
            E L +  + + + H+H+ + T  +   W+   K  ED
Sbjct: 1637 ELLDNEEVFNHIPHEHVLKITVAIYDSWQFARKFNED 1673


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 212 CIPVDLIDSPSQSSRPLDIISQT*LTTLVN 301
           CIPVD+  S S SS      S T  ++LV+
Sbjct: 103 CIPVDIDPSSSSSSAASSTTSTTSSSSLVS 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,673,607
Number of Sequences: 5004
Number of extensions: 29643
Number of successful extensions: 58
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)