Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15n02
         (462 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC010543-1|AAH10543.1|  212|Homo sapiens MED8 protein protein.         42   0.001
BC010019-1|AAH10019.3|  179|Homo sapiens mediator of RNA polymer...    42   0.001
AL139289-6|CAI23382.1|  179|Homo sapiens mediator of RNA polymer...    42   0.001
AL139289-5|CAI23381.1|  212|Homo sapiens mediator of RNA polymer...    42   0.001
AF521562-1|AAM76709.1|  268|Homo sapiens mediator of RNA polymer...    42   0.001

>BC010543-1|AAH10543.1|  212|Homo sapiens MED8 protein protein.
          Length = 212

 Score = 41.5 bits (93), Expect = 0.001
 Identities = 43/136 (31%), Positives = 55/136 (40%), Gaps = 24/136 (17%)
 Frame = -1

Query: 342 AIITSSLSHKHIAQFTKVVSHVWEIISKGREDWEGESMRSTGMQPTHNIADTHALVTAVG 163
           A I +  + K I    K+ S++ E ISK   + E   +R    + T N  DT+ALV AV 
Sbjct: 40  ARIGADAAQKQIQSLNKMCSNLLEKISKEERESESGGLRPN--KQTFNPTDTNALVAAVA 97

Query: 162 TGKGLR---------PGMANMVGQXXXXXXXXXXXXPQLGPAPSTLP------------- 49
            GKGL          PG A   G              Q+  APS                
Sbjct: 98  FGKGLSNWRPSGSSGPGQAGQPGAGTILAGTSGLQQVQMAGAPSQQQPMLSGVQMAQAGQ 157

Query: 48  --KAPSAIKTNIKAAN 7
             K PS IKTNIK+A+
Sbjct: 158 PGKMPSGIKTNIKSAS 173


>BC010019-1|AAH10019.3|  179|Homo sapiens mediator of RNA polymerase
           II transcription, subunit 8 homolog (S. cerevisiae)
           protein.
          Length = 179

 Score = 41.5 bits (93), Expect = 0.001
 Identities = 43/136 (31%), Positives = 55/136 (40%), Gaps = 24/136 (17%)
 Frame = -1

Query: 342 AIITSSLSHKHIAQFTKVVSHVWEIISKGREDWEGESMRSTGMQPTHNIADTHALVTAVG 163
           A I +  + K I    K+ S++ E ISK   + E   +R    + T N  DT+ALV AV 
Sbjct: 40  ARIGADAAQKQIQSLNKMCSNLLEKISKEERESESGGLRPN--KQTFNPTDTNALVAAVA 97

Query: 162 TGKGLR---------PGMANMVGQXXXXXXXXXXXXPQLGPAPSTLP------------- 49
            GKGL          PG A   G              Q+  APS                
Sbjct: 98  FGKGLSNWRPSGSSGPGQAGQPGAGTILAGTSGLQQVQMAGAPSQQQPMLSGVQMAQAGQ 157

Query: 48  --KAPSAIKTNIKAAN 7
             K PS IKTNIK+A+
Sbjct: 158 PGKMPSGIKTNIKSAS 173


>AL139289-6|CAI23382.1|  179|Homo sapiens mediator of RNA polymerase
           II transcription, subunit 8 homolog (S. cerevisiae)
           protein.
          Length = 179

 Score = 41.5 bits (93), Expect = 0.001
 Identities = 43/136 (31%), Positives = 55/136 (40%), Gaps = 24/136 (17%)
 Frame = -1

Query: 342 AIITSSLSHKHIAQFTKVVSHVWEIISKGREDWEGESMRSTGMQPTHNIADTHALVTAVG 163
           A I +  + K I    K+ S++ E ISK   + E   +R    + T N  DT+ALV AV 
Sbjct: 40  ARIGADAAQKQIQSLNKMCSNLLEKISKEERESESGGLRPN--KQTFNPTDTNALVAAVA 97

Query: 162 TGKGLR---------PGMANMVGQXXXXXXXXXXXXPQLGPAPSTLP------------- 49
            GKGL          PG A   G              Q+  APS                
Sbjct: 98  FGKGLSNWRPSGSSGPGQAGQPGAGTILAGTSGLQQVQMAGAPSQQQPMLSGVQMAQAGQ 157

Query: 48  --KAPSAIKTNIKAAN 7
             K PS IKTNIK+A+
Sbjct: 158 PGKMPSGIKTNIKSAS 173


>AL139289-5|CAI23381.1|  212|Homo sapiens mediator of RNA polymerase
           II transcription, subunit 8 homolog (S. cerevisiae)
           protein.
          Length = 212

 Score = 41.5 bits (93), Expect = 0.001
 Identities = 43/136 (31%), Positives = 55/136 (40%), Gaps = 24/136 (17%)
 Frame = -1

Query: 342 AIITSSLSHKHIAQFTKVVSHVWEIISKGREDWEGESMRSTGMQPTHNIADTHALVTAVG 163
           A I +  + K I    K+ S++ E ISK   + E   +R    + T N  DT+ALV AV 
Sbjct: 40  ARIGADAAQKQIQSLNKMCSNLLEKISKEERESESGGLRPN--KQTFNPTDTNALVAAVA 97

Query: 162 TGKGLR---------PGMANMVGQXXXXXXXXXXXXPQLGPAPSTLP------------- 49
            GKGL          PG A   G              Q+  APS                
Sbjct: 98  FGKGLSNWRPSGSSGPGQAGQPGAGTILAGTSGLQQVQMAGAPSQQQPMLSGVQMAQAGQ 157

Query: 48  --KAPSAIKTNIKAAN 7
             K PS IKTNIK+A+
Sbjct: 158 PGKMPSGIKTNIKSAS 173


>AF521562-1|AAM76709.1|  268|Homo sapiens mediator of RNA polymerase
           II transcription subunit MED8 protein.
          Length = 268

 Score = 41.5 bits (93), Expect = 0.001
 Identities = 43/136 (31%), Positives = 55/136 (40%), Gaps = 24/136 (17%)
 Frame = -1

Query: 342 AIITSSLSHKHIAQFTKVVSHVWEIISKGREDWEGESMRSTGMQPTHNIADTHALVTAVG 163
           A I +  + K I    K+ S++ E ISK   + E   +R    + T N  DT+ALV AV 
Sbjct: 129 ARIGADAAQKQIQSLNKMCSNLLEKISKEERESESGGLRPN--KQTFNPTDTNALVAAVA 186

Query: 162 TGKGLR---------PGMANMVGQXXXXXXXXXXXXPQLGPAPSTLP------------- 49
            GKGL          PG A   G              Q+  APS                
Sbjct: 187 FGKGLSNWRPSGSSGPGQAGQPGAGTILAGTSGLQQVQMAGAPSQQQPMLSGVQMAQAGQ 246

Query: 48  --KAPSAIKTNIKAAN 7
             K PS IKTNIK+A+
Sbjct: 247 PGKMPSGIKTNIKSAS 262


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,264,443
Number of Sequences: 237096
Number of extensions: 989185
Number of successful extensions: 2386
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2386
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3929066862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)