Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15n01
(836 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC146810-1|AAI46811.1| 1099|Homo sapiens NOL8 protein protein. 33 0.97
BC013788-1|AAH13788.2| 695|Homo sapiens NOL8 protein protein. 33 0.97
AL136097-11|CAI16206.1| 1099|Homo sapiens nucleolar protein 8 pr... 33 0.97
AK024786-1|BAB15003.1| 341|Homo sapiens protein ( Homo sapiens ... 33 0.97
AK024245-1|BAB14857.1| 858|Homo sapiens protein ( Homo sapiens ... 33 0.97
AK000743-1|BAA91356.1| 573|Homo sapiens protein ( Homo sapiens ... 33 0.97
AB109030-1|BAC99315.1| 1167|Homo sapiens Nop132 protein. 33 0.97
AB105104-1|BAD12268.1| 1167|Homo sapiens nucleolar protein 8 pro... 33 0.97
BC113712-1|AAI13713.1| 398|Homo sapiens FLJ46536 protein protein. 31 5.2
AK131246-1|BAD18426.1| 607|Homo sapiens protein ( Homo sapiens ... 31 5.2
AK128393-1|BAC87417.1| 398|Homo sapiens mily M, alpha member 1 ... 31 5.2
AK022755-1|BAB14229.1| 846|Homo sapiens protein ( Homo sapiens ... 31 5.2
BC028363-1|AAH28363.1| 931|Homo sapiens phosphatidylinositol gl... 31 6.8
AL137607-1|CAB70839.1| 825|Homo sapiens hypothetical protein pr... 31 6.8
AF109219-1|AAD11432.1| 931|Homo sapiens Mcd4p homolog protein. 31 6.8
AB065806-1|BAC06025.1| 311|Homo sapiens seven transmembrane hel... 30 9.0
>BC146810-1|AAI46811.1| 1099|Homo sapiens NOL8 protein protein.
Length = 1099
Score = 33.5 bits (73), Expect = 0.97
Identities = 29/112 (25%), Positives = 49/112 (43%)
Frame = -3
Query: 783 DEKTKQLNILQNVLGVTLKSIEPEQDSQKPKPKLGMLRFDPLQPSHAKFLMQQAEDVKTE 604
+EK K LN++Q+VL + L S + S K ++ +DP + HA + ++ + K
Sbjct: 842 EEKKKALNVVQSVLQINL-SNSTNRGSVAAKKFKDIIHYDPTKQDHATYERKRDDKPKES 900
Query: 603 PVXXXXXXXXXXXXXXXKQEHLEQSQENKIEVSKETFYKVSETLKETIAQPK 448
K++ + E EVSKE +Y ++ LKE K
Sbjct: 901 KA---------------KRKKKREEAEKLPEVSKEMYYNIAMDLKEIFQTTK 937
>BC013788-1|AAH13788.2| 695|Homo sapiens NOL8 protein protein.
Length = 695
Score = 33.5 bits (73), Expect = 0.97
Identities = 29/112 (25%), Positives = 49/112 (43%)
Frame = -3
Query: 783 DEKTKQLNILQNVLGVTLKSIEPEQDSQKPKPKLGMLRFDPLQPSHAKFLMQQAEDVKTE 604
+EK K LN++Q+VL + L S + S K ++ +DP + HA + ++ + K
Sbjct: 438 EEKKKALNVVQSVLQINL-SNSTNRGSVAAKKFKDIIHYDPTKQDHATYERKRDDKPKES 496
Query: 603 PVXXXXXXXXXXXXXXXKQEHLEQSQENKIEVSKETFYKVSETLKETIAQPK 448
K++ + E EVSKE +Y ++ LKE K
Sbjct: 497 KA---------------KRKKKREEAEKLPEVSKEMYYNIAMDLKEIFQTTK 533
>AL136097-11|CAI16206.1| 1099|Homo sapiens nucleolar protein 8
protein.
Length = 1099
Score = 33.5 bits (73), Expect = 0.97
Identities = 29/112 (25%), Positives = 49/112 (43%)
Frame = -3
Query: 783 DEKTKQLNILQNVLGVTLKSIEPEQDSQKPKPKLGMLRFDPLQPSHAKFLMQQAEDVKTE 604
+EK K LN++Q+VL + L S + S K ++ +DP + HA + ++ + K
Sbjct: 842 EEKKKALNVVQSVLQINL-SNSTNRGSVAAKKFKDIIHYDPTKQDHATYERKRDDKPKES 900
Query: 603 PVXXXXXXXXXXXXXXXKQEHLEQSQENKIEVSKETFYKVSETLKETIAQPK 448
K++ + E EVSKE +Y ++ LKE K
Sbjct: 901 KA---------------KRKKKREEAEKLPEVSKEMYYNIAMDLKEIFQTTK 937
>AK024786-1|BAB15003.1| 341|Homo sapiens protein ( Homo sapiens
cDNA: FLJ21133 fis, clone CAS07019. ).
Length = 341
Score = 33.5 bits (73), Expect = 0.97
Identities = 29/112 (25%), Positives = 49/112 (43%)
Frame = -3
Query: 783 DEKTKQLNILQNVLGVTLKSIEPEQDSQKPKPKLGMLRFDPLQPSHAKFLMQQAEDVKTE 604
+EK K LN++Q+VL + L S + S K ++ +DP + HA + ++ + K
Sbjct: 84 EEKKKALNVVQSVLQINL-SNSTNRGSVAAKKFKDIIHYDPTKQDHATYERKRDDKPKES 142
Query: 603 PVXXXXXXXXXXXXXXXKQEHLEQSQENKIEVSKETFYKVSETLKETIAQPK 448
K++ + E EVSKE +Y ++ LKE K
Sbjct: 143 KA---------------KRKKKREEAEKLPEVSKEMYYNIAMDLKEIFQTTK 179
>AK024245-1|BAB14857.1| 858|Homo sapiens protein ( Homo sapiens
cDNA FLJ14183 fis, clone NT2RP2004920, weakly similar to
TRANSCRIPTIONAL REGULATOR ATRX. ).
Length = 858
Score = 33.5 bits (73), Expect = 0.97
Identities = 29/112 (25%), Positives = 49/112 (43%)
Frame = -3
Query: 783 DEKTKQLNILQNVLGVTLKSIEPEQDSQKPKPKLGMLRFDPLQPSHAKFLMQQAEDVKTE 604
+EK K LN++Q+VL + L S + S K ++ +DP + HA + ++ + K
Sbjct: 601 EEKKKALNVVQSVLQINL-SNSTNRGSVAAKKFKDIIHYDPTKQDHATYERKRDDKPKES 659
Query: 603 PVXXXXXXXXXXXXXXXKQEHLEQSQENKIEVSKETFYKVSETLKETIAQPK 448
K++ + E EVSKE +Y ++ LKE K
Sbjct: 660 KA---------------KRKKKREEAEKLPEVSKEMYYNIAMDLKEIFQTTK 696
>AK000743-1|BAA91356.1| 573|Homo sapiens protein ( Homo sapiens
cDNA FLJ20736 fis, clone HEP08473. ).
Length = 573
Score = 33.5 bits (73), Expect = 0.97
Identities = 31/112 (27%), Positives = 49/112 (43%)
Frame = -3
Query: 783 DEKTKQLNILQNVLGVTLKSIEPEQDSQKPKPKLGMLRFDPLQPSHAKFLMQQAEDVKTE 604
+EK K LN++Q+VL + L S + S K +L +DP + HA + ++ D K
Sbjct: 326 EEKKKALNVVQSVLQINL-SNSTNRGSVAAKKFKDILHYDPTKQDHATY--ERKRDDKPR 382
Query: 603 PVXXXXXXXXXXXXXXXKQEHLEQSQENKIEVSKETFYKVSETLKETIAQPK 448
K++ + E EVSKE +Y ++ LKE K
Sbjct: 383 -------------ESKAKRKKKREEAEKLPEVSKEMYYNIAMDLKEIFQTTK 421
>AB109030-1|BAC99315.1| 1167|Homo sapiens Nop132 protein.
Length = 1167
Score = 33.5 bits (73), Expect = 0.97
Identities = 31/112 (27%), Positives = 49/112 (43%)
Frame = -3
Query: 783 DEKTKQLNILQNVLGVTLKSIEPEQDSQKPKPKLGMLRFDPLQPSHAKFLMQQAEDVKTE 604
+EK K LN++Q+VL + L S + S K +L +DP + HA + ++ D K
Sbjct: 910 EEKKKALNVVQSVLQINL-SNSTNRGSVAAKKFKDILHYDPTKQDHATY--ERKRDDKPR 966
Query: 603 PVXXXXXXXXXXXXXXXKQEHLEQSQENKIEVSKETFYKVSETLKETIAQPK 448
K++ + E EVSKE +Y ++ LKE K
Sbjct: 967 -------------ESKAKRKKKREEAEKLPEVSKEMYYNIAMDLKEIFQTTK 1005
>AB105104-1|BAD12268.1| 1167|Homo sapiens nucleolar protein 8 protein.
Length = 1167
Score = 33.5 bits (73), Expect = 0.97
Identities = 29/112 (25%), Positives = 49/112 (43%)
Frame = -3
Query: 783 DEKTKQLNILQNVLGVTLKSIEPEQDSQKPKPKLGMLRFDPLQPSHAKFLMQQAEDVKTE 604
+EK K LN++Q+VL + L S + S K ++ +DP + HA + ++ + K
Sbjct: 910 EEKKKALNVVQSVLQINL-SNSTNRGSVAAKKFKDIIHYDPTKQDHATYERKRDDKPKES 968
Query: 603 PVXXXXXXXXXXXXXXXKQEHLEQSQENKIEVSKETFYKVSETLKETIAQPK 448
K++ + E EVSKE +Y ++ LKE K
Sbjct: 969 KA---------------KRKKKREEAEKLPEVSKEMYYNIAMDLKEIFQTTK 1005
>BC113712-1|AAI13713.1| 398|Homo sapiens FLJ46536 protein protein.
Length = 398
Score = 31.1 bits (67), Expect = 5.2
Identities = 11/42 (26%), Positives = 29/42 (69%)
Frame = -3
Query: 132 QKDRRELKSLMKRRIYNKERKNQMFHKKIGGRRKTMKKSYRK 7
Q++R EL++ ++++ ER++ M+ +++GG+R ++ R+
Sbjct: 281 QEERAELQAQLEQKQQEAERRDAMYQEELGGQRDLVQAMKRR 322
>AK131246-1|BAD18426.1| 607|Homo sapiens protein ( Homo sapiens
cDNA FLJ16168 fis, clone BRHIP2002722. ).
Length = 607
Score = 31.1 bits (67), Expect = 5.2
Identities = 11/42 (26%), Positives = 29/42 (69%)
Frame = -3
Query: 132 QKDRRELKSLMKRRIYNKERKNQMFHKKIGGRRKTMKKSYRK 7
Q++R EL++ ++++ ER++ M+ +++GG+R ++ R+
Sbjct: 474 QEERAELQAQLEQKQQEAERRDAMYQEELGGQRDLVQAMKRR 515
>AK128393-1|BAC87417.1| 398|Homo sapiens mily M, alpha member 1
(Kcnma1). protein.
Length = 398
Score = 31.1 bits (67), Expect = 5.2
Identities = 11/42 (26%), Positives = 29/42 (69%)
Frame = -3
Query: 132 QKDRRELKSLMKRRIYNKERKNQMFHKKIGGRRKTMKKSYRK 7
Q++R EL++ ++++ ER++ M+ +++GG+R ++ R+
Sbjct: 281 QEERAELQAQLEQKQQEAERRDAMYQEELGGQRDLVQAMKRR 322
>AK022755-1|BAB14229.1| 846|Homo sapiens protein ( Homo sapiens
cDNA FLJ12693 fis, clone NT2RP1000324. ).
Length = 846
Score = 31.1 bits (67), Expect = 5.2
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = -3
Query: 783 DEKTKQLNILQNVLGVTLKSIEPEQDSQKPKPKLGMLRFDPLQPSHAKF 637
+EK K LN++Q+VL + L S + S K ++ +DP + HA +
Sbjct: 784 EEKKKALNVVQSVLQINL-SNSTNRGSVAAKKFKDIIHYDPTKQDHATY 831
>BC028363-1|AAH28363.1| 931|Homo sapiens phosphatidylinositol
glycan anchor biosynthesis, class N protein.
Length = 931
Score = 30.7 bits (66), Expect = 6.8
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +3
Query: 501 PWTLLSCSLVIVLNVLVYFDSHSACPFSFFFYSL--VQFLHLRLAALKILHDLV 656
P LL CS V + ++ +F ACP++++ Y L + + L +++ DLV
Sbjct: 480 PSHLLPCSFVAIGILVAFFLLIQACPWTYYVYGLLPLPIWYAVLREFQVIQDLV 533
>AL137607-1|CAB70839.1| 825|Homo sapiens hypothetical protein
protein.
Length = 825
Score = 30.7 bits (66), Expect = 6.8
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +3
Query: 501 PWTLLSCSLVIVLNVLVYFDSHSACPFSFFFYSL--VQFLHLRLAALKILHDLV 656
P LL CS V + ++ +F ACP++++ Y L + + L +++ DLV
Sbjct: 374 PSHLLPCSFVAIGILVAFFLLIQACPWTYYVYGLLPLPIWYAVLREFQVIQDLV 427
>AF109219-1|AAD11432.1| 931|Homo sapiens Mcd4p homolog protein.
Length = 931
Score = 30.7 bits (66), Expect = 6.8
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +3
Query: 501 PWTLLSCSLVIVLNVLVYFDSHSACPFSFFFYSL--VQFLHLRLAALKILHDLV 656
P LL CS V + ++ +F ACP++++ Y L + + L +++ DLV
Sbjct: 480 PSHLLPCSFVAIGILVAFFLLIQACPWTYYVYGLLPLPIWYAVLREFQVIQDLV 533
>AB065806-1|BAC06025.1| 311|Homo sapiens seven transmembrane helix
receptor protein.
Length = 311
Score = 30.3 bits (65), Expect = 9.0
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +3
Query: 537 LNVLVYFDSHSACPFSFFF--YSLVQFLHLRLAALKILHDLVEEDQISTFL 683
L VL+ DSH P FF S + ++ K+L +L++E Q TF+
Sbjct: 46 LIVLIRMDSHLHTPMYFFLSNLSFIDVCYISSTVPKMLSNLLQEQQTITFV 96
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,635,317
Number of Sequences: 237096
Number of extensions: 1385054
Number of successful extensions: 4313
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 4099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4305
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10538170902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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