Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15m24
         (782 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1562 - 38268514-38268902,38269310-38269451,38269517-382698...    32   0.45 
11_04_0003 - 11999569-11999754,12000061-12000139,12000208-120003...    29   3.2  
04_04_0751 - 27769616-27769684,27769795-27769917,27769998-277707...    29   4.2  
05_04_0153 + 18536874-18537266,18537369-18537436,18537511-185377...    28   7.3  
04_03_0093 - 11085882-11087339                                         28   7.3  

>01_06_1562 -
           38268514-38268902,38269310-38269451,38269517-38269865,
           38270848-38271107
          Length = 379

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -3

Query: 747 LNRLSLAKIKNVTPAVVDCISEYYKNLKCLALYQCPRIVN 628
           L RL+++   N + A +  +S   KNLKCL L  C R V+
Sbjct: 159 LTRLNISGCSNFSDAALAYLSSQCKNLKCLNLCGCVRAVS 198


>11_04_0003 -
           11999569-11999754,12000061-12000139,12000208-12000318,
           12000390-12000523
          Length = 169

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +3

Query: 495 NTYL-FAHLYEWFFEIYISRQLRRCVSTTRRLFSGTWPLIAFRSRS*QFEDTGIK 656
           NTY  F  + ++ F+ Y  R  +R  S  R      WPL  F     Q +DT I+
Sbjct: 71  NTYQEFLRILDFAFKRYYQRGRQRKNSRERIFVRNKWPLPKFPMSERQLDDTSIQ 125


>04_04_0751 - 27769616-27769684,27769795-27769917,27769998-27770770,
            27771407-27771773,27772104-27772217,27772307-27772403,
            27772968-27773088,27773168-27773252,27773349-27773498,
            27773630-27773746,27773819-27773905,27773981-27774049,
            27774125-27774181,27774266-27774349,27774477-27774513,
            27774721-27774869,27776053-27776538,27776743-27776886,
            27776961-27777509,27778332-27778526,27779226-27779310,
            27779570-27779670,27779689-27780360,27781101-27781433,
            27781957-27782038,27782258-27782334,27782713-27782817,
            27783810-27783944,27784437-27785159,27785882-27786663,
            27787480-27789187
          Length = 2891

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 459  ITFVHKQRSSR*NTYLFAHLYEWFFEIYISRQ 554
            + FVHK R +  + ++ AHL+EW   I+  +Q
Sbjct: 2350 VDFVHKHRKALESEHVSAHLHEWIDLIFGFKQ 2381


>05_04_0153 +
           18536874-18537266,18537369-18537436,18537511-18537721,
           18537918-18538036,18538103-18538172,18538260-18538331,
           18538472-18538585,18540633-18540698
          Length = 370

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 437 LRRDNHKNHICP*TTVLKVEHVFVRPL 517
           L++ N K  IC    + + +H+FVRPL
Sbjct: 146 LKKSNIKEDICSYVLMAEPDHIFVRPL 172


>04_03_0093 - 11085882-11087339
          Length = 485

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = -3

Query: 768 GSPSMVKLNRLSLAKIKNVTPAVVDCISEYYKNLKCLALYQCPRIVN 628
           G  SM  L  LSL +I   T   V  +     NL  L L QCP + +
Sbjct: 169 GGVSMPSLEILSLKRIMATTDEAVQQLVSGCPNLADLTLEQCPSVAD 215


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,083,336
Number of Sequences: 37544
Number of extensions: 380969
Number of successful extensions: 716
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)