Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15m24
         (782 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      25   0.60 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    25   1.1  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   3.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.6  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   7.4  
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    22   7.4  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   7.4  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   9.8  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   9.8  

>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 25.4 bits (53), Expect = 0.60
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 529 NHSYKWANKYVFYLEDRCLWTNVIFV 452
           NH Y   NK ++++ED  L T   F+
Sbjct: 211 NHDYNLENKLIYFIEDIGLNTYYFFL 236


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 20/81 (24%), Positives = 35/81 (43%)
 Frame = -2

Query: 664 MFGFIPVSSNCQLRLRKAIKGQVPENRRRVVLTQRLSCLEM*ISKNHSYKWANKYVFYLE 485
           +F  + +S +  + + + IK    +N RRV LT  L         +      N       
Sbjct: 274 IFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTILLVWAISAAIGSPIVLGLNNTPDRTP 333

Query: 484 DRCLWTNVIFVIIST*FNIYV 422
           D+CL+ N  F+I S+  + Y+
Sbjct: 334 DQCLFYNTDFIIYSSLSSFYI 354


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 529 NHSYKWANKYVFYLEDRCLWTNVIFV 452
           NH Y   NK  +++ED  L T   F+
Sbjct: 211 NHDYNLENKLNYFIEDIGLNTYYFFL 236


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 739 TESCQNKERHSSRGRLHLGILQEPKMFGF 653
           T S +NK+ HS+R    + ++  PK+  F
Sbjct: 588 TCSARNKQGHSARRSGDVAVIVPPKISPF 616


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +2

Query: 122 EGNMVRSLTDYIISGLL 172
           EGNM    TDY   GLL
Sbjct: 196 EGNMTACGTDYFNRGLL 212


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +1

Query: 505 CSPTYMSGFLKFTFQGSLGVVS 570
           C+ T+M G +   F G   V S
Sbjct: 49  CTDTFMEGVIVLAFSGLFSVFS 70


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +2

Query: 122 EGNMVRSLTDYIISGLL 172
           EGNM    TDY   GLL
Sbjct: 72  EGNMTACGTDYFNRGLL 88


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 681 YYKNLKCLALYQCPRIVN 628
           YY + + +A Y C R+ N
Sbjct: 235 YYMHQQIMARYNCERLCN 252


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = -3

Query: 741 RLSLAKIKNVTPAVV---DCISEYYKNLKCLALYQCPRIVNSDYEKQLRAKFRKI 586
           R++L     + P V+   D  +E+ +++   A+    ++VN+   + L  +F+KI
Sbjct: 461 RITLNSKDPLDPPVIWSNDLATEHDRSVMIQAIRVVQKLVNTTVMRDLGVEFQKI 515


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,124
Number of Sequences: 438
Number of extensions: 5223
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)