Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15m21
(811 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom... 28 1.8
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 2.4
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 24 3.8
SPBC2G5.06c |hmt2|cad1|sulfide-quinone oxidoreductase|Schizosacc... 27 4.2
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ... 26 7.3
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 26 7.3
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual 26 7.3
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ... 26 7.3
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po... 25 9.6
>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 27.9 bits (59), Expect = 1.8
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 681 GTAGGCSARAISQSRASGGRYGCGLQPGPRR 773
G GG SA + S GG +G G+ GPR+
Sbjct: 76 GADGGMSADDLFASFFGGGMFGGGMPRGPRK 106
>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 27.5 bits (58), Expect = 2.4
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 194 RAHHLFQNITMSSIIRNIFSLSFFYSIGTYLYNTIL 301
R +++ +++ S NI+S+ FFY Y Y IL
Sbjct: 24 RCCYMYDTVSLVSNAPNIYSIPFFYDRICYDYKNIL 59
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 24.2 bits (50), Expect(2) = 3.8
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = -2
Query: 354 VACFCVRYYHIDNYTMFDKIVLYKYVPIE*KNESE----KILRIILDIVMFWNR**ALEQ 187
V C C + +++Y KIV+ +E SE K++R+I D++ ++R L +
Sbjct: 1103 VPCLCSLFTRLNDYERLKKIVVSCLKSLEEARHSENNFQKMVRLI-DLIGLFSRYGDLNR 1161
Query: 186 -SERWISNLSILS 151
++ W +L +S
Sbjct: 1162 INDDWKHSLDFIS 1174
Score = 20.6 bits (41), Expect(2) = 3.8
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -2
Query: 165 LSILSFCKRLCLLKLYIIKSPLMNSLIN 82
+ I+ R+CL + + SPLM S ++
Sbjct: 1201 IHIIDNMSRICLRETSLFISPLMLSTLD 1228
>SPBC2G5.06c |hmt2|cad1|sulfide-quinone
oxidoreductase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 26.6 bits (56), Expect = 4.2
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 467 TVLGTTTHNSTFKQYISTHIRYYLVSGSSAGAAARH 574
+V G+ S ++ STH + +V G SAG + H
Sbjct: 10 SVTGSFQSASMLARFASTHHKVLVVGGGSAGISVAH 45
>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 868
Score = 25.8 bits (54), Expect = 7.3
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -2
Query: 450 ARCPVHPTDASIFIRKCSTRRFTTKLLYRRRFVACF 343
A VHPTD S F+ S+ R+T + CF
Sbjct: 278 ANVSVHPTDNSFFLTTSSSGRWTIWQFLDDGYRECF 313
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 25.8 bits (54), Expect = 7.3
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +2
Query: 146 QNESIDRLLIHRSDCSRAHHLFQNITMSSIIRNIFSLSFFYSIGTYLYNTI 298
Q++S+D L+ D +HH T S+I S FY++ Y + ++
Sbjct: 121 QHQSLDSFLLSLFDLLCSHHFSVEFTSISLIIK-SSQWLFYTLSDYAHESL 170
>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 25.8 bits (54), Expect = 7.3
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +3
Query: 192 LELITYSKT*LCLVLFVIFSHFH 260
L+++ S LCL+ F+++S+FH
Sbjct: 551 LKILFISLCILCLLQFIVYSYFH 573
>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 25.8 bits (54), Expect = 7.3
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = -2
Query: 483 VVPRTVAARPGARCPVHPTDASIFIRKCST-RRFTTKLLYRRRFVACFCVRYYHIDNYTM 307
V PRT A RPGAR +A R ST + F + + F Y + Y +
Sbjct: 286 VEPRTQALRPGARLTYKLREARSSKRGESTPQSFREEDNNLMELLKLFGKGVYLLAQYKL 345
Query: 306 FDKIVLYKYVPIE*KN 259
+ + ++ +PIE +N
Sbjct: 346 REALNCFQSLPIEQQN 361
>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 427
Score = 25.4 bits (53), Expect = 9.6
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 471 SSAQQHITQPLNNIYQRTYGTIWYRVRPREPQRDTY 578
+S+ Q LN++ + Y ++ R RP E +D+Y
Sbjct: 353 NSSSQRSNVSLNSLIECPYKSMMSRKRPHEAGKDSY 388
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,136,647
Number of Sequences: 5004
Number of extensions: 61566
Number of successful extensions: 129
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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