Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15m20
         (771 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          25   0.78 
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    25   1.0  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    25   1.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.4  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    24   1.8  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   7.3  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   7.3  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   7.3  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   7.3  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          22   7.3  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   7.3  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   7.3  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   7.3  

>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 25.0 bits (52), Expect = 0.78
 Identities = 9/36 (25%), Positives = 21/36 (58%)
 Frame = +1

Query: 133 VNAVTYLEIIILRFQSIVQRPPHPSNRNALLLHGRN 240
           +N+V Y+E +     ++ ++ P  +NR +++ H  N
Sbjct: 89  INSVVYIEQLTKLNNAVEEKRPELTNRKSVVFHHDN 124


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 649 GGHDERILVSCRFIEVEDLW 708
           GGH E++   CR    +DLW
Sbjct: 71  GGHCEKVGCICRKTSFKDLW 90


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = +1

Query: 133 VNAVTYLEIIILRFQSIVQRPPHPSNRNALLLHGRN 240
           +N+V Y+E +     ++ ++ P  +NR  ++ H  N
Sbjct: 211 INSVVYIEQLTKLNNAVEEKRPELTNRKGVVFHHDN 246


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -1

Query: 552  SRYLKHRSPFSSNPSLATKGSTSKLTLRHIPLSFSPD 442
            S+Y ++ +P+    S  + G  S  + R+IP+S SP+
Sbjct: 1822 SQYGQYGAPYDHYGSRGSVGRRSVGSARNIPVSGSPE 1858


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 649 GGHDERILVSCRFIEVEDLW 708
           GGH E+ +  CR    +DLW
Sbjct: 71  GGHCEKGVCICRKTSFKDLW 90


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 769 RQKNNNAYATGARTSCESARSRD 701
           R ++ N+Y      SC   RSR+
Sbjct: 238 RHEDRNSYRNDGERSCSRDRSRE 260


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 769 RQKNNNAYATGARTSCESARSRD 701
           R ++ N+Y      SC   RSR+
Sbjct: 238 RHEDRNSYRNDGERSCSRDRSRE 260


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 769 RQKNNNAYATGARTSCESARSRD 701
           R ++ N+Y      SC   RSR+
Sbjct: 238 RHEDRNSYRNDGERSCSRDRSRE 260


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 769 RQKNNNAYATGARTSCESARSRD 701
           R ++ N+Y      SC   RSR+
Sbjct: 238 RHEDRNSYRNDGERSCSRDRSRE 260


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 769 RQKNNNAYATGARTSCESARSRD 701
           R ++ N+Y      SC   RSR+
Sbjct: 238 RHEDRNSYRNDGERSCSRDRSRE 260


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 769 RQKNNNAYATGARTSCESARSRD 701
           R ++ N+Y      SC   RSR+
Sbjct: 238 RHEDGNSYRNDGERSCSRDRSRE 260


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 769 RQKNNNAYATGARTSCESARSRD 701
           R ++ N+Y      SC   RSR+
Sbjct: 238 RHEDRNSYRNDGERSCSRDRSRE 260


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 769 RQKNNNAYATGARTSCESARSRD 701
           R ++ N+Y      SC   RSR+
Sbjct: 238 RHEDRNSYRNDGERSCSRDRSRE 260


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,178
Number of Sequences: 438
Number of extensions: 4107
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)