Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15m18
         (848 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    32   0.12 
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    27   2.5  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    27   3.4  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    26   7.8  
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ...    26   7.8  

>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 674 QNKKTENLEQDLIVTFENII-IIFEQTVVLFPKFVF 778
           + K  ENL +DL  TF+N I II +  VV FP F F
Sbjct: 620 KRKDDENLLKDLGRTFQNFISIIPDGVVVFFPSFAF 655


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1028

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -1

Query: 350  YPYN-FEFFCTVTGAYRLYEGLH 285
            Y +N F++ C +  AYRLYEG +
Sbjct: 995  YTFNYFDYACLMDHAYRLYEGFN 1017


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 212 SNLPIKTAFIPNSTTGTLISNLMVGAGLHKVYRLQLQ 322
           S+LP + +  P    G  +SN  V +GL K  RL +Q
Sbjct: 714 SSLPEEVSRQPTDDKGEQVSNADVDSGLSKTERLTIQ 750


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1389

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 23/86 (26%), Positives = 36/86 (41%)
 Frame = +2

Query: 23   YHISADSLSKLVTLXCN*SKFEHKTFKLKIFCIRGCRVLKDKMPSYTHLTNMHDCCRFYA 202
            Y  +ADSL K + + CN         K  I  I    +L D   S+  L N H+  RF  
Sbjct: 775  YSRAADSLEKSIQICCN-------VLKEDITSIFSWEILGDACLSFCQLKNYHN--RFPN 825

Query: 203  AKHSNLPIKTAFIPNSTTGTLISNLM 280
            +  S++   T  +  +  G    N++
Sbjct: 826  SLISDILFTTEAMKCANNGRQFENMI 851


>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
 Frame = -1

Query: 224 WANWNASQ---HKTCNNHACLLNVCNSASYP 141
           WA   AS+   HK CN H  +++  N+A  P
Sbjct: 54  WARRMASEIQLHKLCNGHKNIIHFYNTAENP 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,732,913
Number of Sequences: 5004
Number of extensions: 82150
Number of successful extensions: 187
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)