Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15m15
         (133 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   1.4  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   1.8  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          19   7.2  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      19   7.2  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -1

Query: 49  CYYYFRYDVSPYLFMI 2
           C YYF   ++P L+ +
Sbjct: 303 CLYYFSTTINPILYNV 318



 Score = 19.4 bits (38), Expect = 4.1
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 46  YYYFRYDVSPYLFMI 2
           YY F   VS  LF+I
Sbjct: 70  YYLFNLAVSDLLFLI 84


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -1

Query: 49  CYYYFRYDVSPYLF 8
           C YYF   ++P L+
Sbjct: 315 CLYYFSTTINPILY 328


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = -1

Query: 46  YYYFRYDVSPY 14
           YYY+  ++ PY
Sbjct: 233 YYYYMREMLPY 243


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = -1

Query: 46  YYYFRYDVSPY 14
           YYY+  ++ PY
Sbjct: 233 YYYYMREMLPY 243


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,976
Number of Sequences: 438
Number of extensions: 530
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 24
effective length of database: 135,831
effective search space used:  2580789
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)