Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15m14
         (308 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces pombe...    26   1.5  
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    25   1.9  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    24   5.9  
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    23   7.9  
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    23   7.9  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    23   7.9  
SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr ...    23   7.9  

>SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = -2

Query: 229 RSTTAFRVVNFELYAKPNI-VIMSIGLTCFGLALGYIAYMRQKYESMGYYSAIDKDGKEI 53
           R    +RV N E+Y +PN  V+  +G   +G+         +  E++      +   K I
Sbjct: 3   RRHRVYRVFNQEMYVEPNFKVVKELGQGAYGIVCAARNVASKDQEAVAIKKITNVFSKSI 62

Query: 52  FEKK 41
             K+
Sbjct: 63  LTKR 66


>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
           Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -2

Query: 208 VVNFELYAKPNIVIMSIGLTCFGLALGYIAY 116
           V+N +LYA P + + S G+  + + +G + +
Sbjct: 201 VINGKLYAGPEVDVWSCGIVLYVMLVGRLPF 231


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 138  WL*DTLHTCDKNMNQWDIILLLIKME 61
            WL D    C + +NQWD++    K E
Sbjct: 2595 WL-DHWILCAQKLNQWDVLFDFSKQE 2619


>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 7/31 (22%), Positives = 18/31 (58%)
 Frame = -3

Query: 267 HTMINLARVCDLCDQLQHLEWSILNYTQNPI 175
           H +I+++++  +  +     +  +NY +NPI
Sbjct: 458 HNIISMSKIAKIMGKTMEQLYGTVNYKKNPI 488


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 169 IMSIGLTCFGLALGYIAYMRQKYESM 92
           + S+GLT   +ALG   Y  + Y S+
Sbjct: 504 VWSLGLTILEMALGAYPYPPESYTSI 529


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 73  DKDGKEIFEKKKSKWD*NYRICK 5
           DKD KE FE KK +   +   CK
Sbjct: 889 DKDEKEKFETKKKELTQDSSFCK 911


>SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 451

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 14/58 (24%), Positives = 25/58 (43%)
 Frame = +3

Query: 87  YPIDSYFCRMYAMYPRAKPKHVSPMLIMTILGFAYSSKLTTLNAVVDRIDRKPSPGLS 260
           Y I S F  ++  +P+  P  V P L +        +K      +++ ++  PSP  S
Sbjct: 65  YDISSGF--VHIKFPKETPGEVFPDLDLLTTLLVNQNKEPVKKPLIEEVEDTPSPSTS 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,386,970
Number of Sequences: 5004
Number of extensions: 26864
Number of successful extensions: 76
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)