Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15m12
         (845 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    27   2.5  
SPBC839.07 |ibp1||itty bitty phosphatase Ibp1|Schizosaccharomyce...    26   5.8  
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb...    26   5.8  

>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = -2

Query: 805 IVLGFSLYGVNKIMAIIVQRCIYNFLHRFQKGSPIIG*CLC-PDIFWKSFKISLRYSTST 629
           IV  F      + MA+IV+   +  +  + KG+P I   +C P+ F  +++  L Y T  
Sbjct: 751 IVRTFEFVSQLRRMAVIVKHGKFKKMDAYVKGAPEIMPSICKPESFPANYQEVLDYYTHN 810

Query: 628 QYS*ILC 608
            +  I C
Sbjct: 811 GFRVIAC 817


>SPBC839.07 |ibp1||itty bitty phosphatase Ibp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 138

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +2

Query: 371 RNDLPKLREYIDISCGQRTRVIKNLPPRYILH 466
           RN + + +E + +S  Q+ ++ +NLP  YILH
Sbjct: 89  RNRITESKEKLSLS--QKEKLFQNLPTVYILH 118


>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 347 TLVKRK*HRNDLPKLRE-YIDISCGQRTRVIKNLPPRYILHC 469
           +LVKR   +NDL  LR  + ++       + KNLPP+ +  C
Sbjct: 471 SLVKRFGTKNDLFFLRRSFKNMGIETLDEIEKNLPPKVVYRC 512


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,376,906
Number of Sequences: 5004
Number of extensions: 70684
Number of successful extensions: 124
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)