Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15m12
(845 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z77650-1|CAB01111.1| 79|Homo sapiens CC-chemokine protein. 33 1.3
X98306-1|CAA66950.1| 98|Homo sapiens monocyte chemoattractant ... 33 1.3
U59808-1|AAD09362.1| 98|Homo sapiens monocyte chemotactic prot... 33 1.3
U46767-1|AAB38703.1| 98|Homo sapiens monocyte chemoattractant ... 33 1.3
CR450337-1|CAG29333.1| 98|Homo sapiens CCL13 protein. 33 1.3
BT007385-1|AAP36049.1| 98|Homo sapiens chemokine (C-C motif) l... 33 1.3
BC008621-1|AAH08621.1| 98|Homo sapiens chemokine (C-C motif) l... 33 1.3
AJ001634-1|CAA04888.1| 98|Homo sapiens monocyte chemotactic pr... 33 1.3
AC002482-1|AAB67307.1| 98|Homo sapiens monocyte chemotactic pr... 33 1.3
AY692226-1|AAU04438.1| 2073|Homo sapiens Cdc42-associated guanin... 30 9.2
AL391280-3|CAI41411.1| 2077|Homo sapiens dedicator of cytokinesi... 30 9.2
AL391237-2|CAI41407.1| 2077|Homo sapiens dedicator of cytokinesi... 30 9.2
>Z77650-1|CAB01111.1| 79|Homo sapiens CC-chemokine protein.
Length = 79
Score = 33.1 bits (72), Expect = 1.3
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -3
Query: 492 CFFECNGKQCNMYRGGRFLITRVRCPQEISIYSLSLGKSL 373
C F + K+ ++ R ++IT RCPQ+ I+ LGK +
Sbjct: 18 CCFTFSSKKISLQRLKSYVITTSRCPQKAVIFRTKLGKEI 57
>X98306-1|CAA66950.1| 98|Homo sapiens monocyte chemoattractant
protein-4 protein.
Length = 98
Score = 33.1 bits (72), Expect = 1.3
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -3
Query: 492 CFFECNGKQCNMYRGGRFLITRVRCPQEISIYSLSLGKSL 373
C F + K+ ++ R ++IT RCPQ+ I+ LGK +
Sbjct: 34 CCFTFSSKKISLQRLKSYVITTSRCPQKAVIFRTKLGKEI 73
>U59808-1|AAD09362.1| 98|Homo sapiens monocyte chemotactic
protein-4 precursor protein.
Length = 98
Score = 33.1 bits (72), Expect = 1.3
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -3
Query: 492 CFFECNGKQCNMYRGGRFLITRVRCPQEISIYSLSLGKSL 373
C F + K+ ++ R ++IT RCPQ+ I+ LGK +
Sbjct: 34 CCFTFSSKKISLQRLKSYVITTSRCPQKAVIFRTKLGKEI 73
>U46767-1|AAB38703.1| 98|Homo sapiens monocyte chemoattractant
protein-4 precursor protein.
Length = 98
Score = 33.1 bits (72), Expect = 1.3
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -3
Query: 492 CFFECNGKQCNMYRGGRFLITRVRCPQEISIYSLSLGKSL 373
C F + K+ ++ R ++IT RCPQ+ I+ LGK +
Sbjct: 34 CCFTFSSKKISLQRLKSYVITTSRCPQKAVIFRTKLGKEI 73
>CR450337-1|CAG29333.1| 98|Homo sapiens CCL13 protein.
Length = 98
Score = 33.1 bits (72), Expect = 1.3
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -3
Query: 492 CFFECNGKQCNMYRGGRFLITRVRCPQEISIYSLSLGKSL 373
C F + K+ ++ R ++IT RCPQ+ I+ LGK +
Sbjct: 34 CCFTFSSKKISLQRLKSYVITTSRCPQKAVIFRTKLGKEI 73
>BT007385-1|AAP36049.1| 98|Homo sapiens chemokine (C-C motif)
ligand 13 protein.
Length = 98
Score = 33.1 bits (72), Expect = 1.3
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -3
Query: 492 CFFECNGKQCNMYRGGRFLITRVRCPQEISIYSLSLGKSL 373
C F + K+ ++ R ++IT RCPQ+ I+ LGK +
Sbjct: 34 CCFTFSSKKISLQRLKSYVITTSRCPQKAVIFRTKLGKEI 73
>BC008621-1|AAH08621.1| 98|Homo sapiens chemokine (C-C motif)
ligand 13 protein.
Length = 98
Score = 33.1 bits (72), Expect = 1.3
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -3
Query: 492 CFFECNGKQCNMYRGGRFLITRVRCPQEISIYSLSLGKSL 373
C F + K+ ++ R ++IT RCPQ+ I+ LGK +
Sbjct: 34 CCFTFSSKKISLQRLKSYVITTSRCPQKAVIFRTKLGKEI 73
>AJ001634-1|CAA04888.1| 98|Homo sapiens monocyte chemotactic
protein 4 (MCP-4) protein.
Length = 98
Score = 33.1 bits (72), Expect = 1.3
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -3
Query: 492 CFFECNGKQCNMYRGGRFLITRVRCPQEISIYSLSLGKSL 373
C F + K+ ++ R ++IT RCPQ+ I+ LGK +
Sbjct: 34 CCFTFSSKKISLQRLKSYVITTSRCPQKAVIFRTKLGKEI 73
>AC002482-1|AAB67307.1| 98|Homo sapiens monocyte chemotactic
protein protein.
Length = 98
Score = 33.1 bits (72), Expect = 1.3
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -3
Query: 492 CFFECNGKQCNMYRGGRFLITRVRCPQEISIYSLSLGKSL 373
C F + K+ ++ R ++IT RCPQ+ I+ LGK +
Sbjct: 34 CCFTFSSKKISLQRLKSYVITTSRCPQKAVIFRTKLGKEI 73
>AY692226-1|AAU04438.1| 2073|Homo sapiens Cdc42-associated guanine
nucleotide exchange factor ACG/DOCK11 protein.
Length = 2073
Score = 30.3 bits (65), Expect = 9.2
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +2
Query: 656 LKTFPKNIRTQTSSNYWRTFLKSMKKIIYAALYYNCHDFIYPIQ*KTQNYKSY 814
LK F KN + T F+ M K Y Y H ++YP+Q K + K++
Sbjct: 608 LKPFEKNCQNITVEV--EEFVPEMTKYCYPFTIYKNHLYVYPLQLKYDSQKTF 658
>AL391280-3|CAI41411.1| 2077|Homo sapiens dedicator of cytokinesis
11 protein.
Length = 2077
Score = 30.3 bits (65), Expect = 9.2
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +2
Query: 656 LKTFPKNIRTQTSSNYWRTFLKSMKKIIYAALYYNCHDFIYPIQ*KTQNYKSY 814
LK F KN + T F+ M K Y Y H ++YP+Q K + K++
Sbjct: 608 LKPFEKNCQNITVEV--EEFVPEMTKYCYPFTIYKNHLYVYPLQLKYDSQKTF 658
>AL391237-2|CAI41407.1| 2077|Homo sapiens dedicator of cytokinesis
11 protein.
Length = 2077
Score = 30.3 bits (65), Expect = 9.2
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +2
Query: 656 LKTFPKNIRTQTSSNYWRTFLKSMKKIIYAALYYNCHDFIYPIQ*KTQNYKSY 814
LK F KN + T F+ M K Y Y H ++YP+Q K + K++
Sbjct: 608 LKPFEKNCQNITVEV--EEFVPEMTKYCYPFTIYKNHLYVYPLQLKYDSQKTF 658
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,487,842
Number of Sequences: 237096
Number of extensions: 2192986
Number of successful extensions: 6898
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6895
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10705443456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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