Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15m08
         (844 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    24   1.5  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    24   1.5  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    24   1.5  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    24   1.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   2.0  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    23   2.7  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   3.5  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   3.5  

>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 691 NNTVFSNYNRSAFSYNADSRMNNCTSSY 774
           N T+ +N N   ++YN ++  NNC   Y
Sbjct: 87  NRTIHNN-NNYKYNYNNNNYNNNCKKLY 113


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 691 NNTVFSNYNRSAFSYNADSRMNNCTSSY 774
           N T+ +N N   ++YN ++  NNC   Y
Sbjct: 87  NKTIHNN-NNYKYNYNNNNYNNNCKKLY 113


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 691 NNTVFSNYNRSAFSYNADSRMNNCTSSY 774
           N T+ +N N   ++YN ++  NNC   Y
Sbjct: 87  NKTIHNN-NNYKYNYNNNNYNNNCKKLY 113


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 691 NNTVFSNYNRSAFSYNADSRMNNCTSSY 774
           N T+ +N N   ++YN ++  NNC   Y
Sbjct: 87  NKTIHNN-NNYKYNYNNNNYNNNCKKLY 113


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -2

Query: 810 VCEDCTLEGDITIGGGTVIHPR 745
           V ++  +EGD+ +GG  ++H R
Sbjct: 107 VKKEAVVEGDLVLGGLMMVHER 128


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 691 NNTVFSNYNRSAFSYNADSRMNN 759
           NN  +SNYN    +YN  +  NN
Sbjct: 320 NNYKYSNYNNYNNNYNNYNNYNN 342


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 691 NNTVFSNYNRSAFSYNADSRMNNCTSSY 774
           NN  +SNYN    +YN ++  NN  ++Y
Sbjct: 87  NNYKYSNYNNYNNNYN-NNYNNNYNNNY 113


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 691 NNTVFSNYNRSAFSYNADSRMNNCTSSY 774
           NN  +SNYN    +YN ++  NN  ++Y
Sbjct: 87  NNYKYSNYNNYNNNYN-NNYNNNYNNNY 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,751
Number of Sequences: 438
Number of extensions: 4433
Number of successful extensions: 24
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)