Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15m07
(894 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1098 - 30395704-30395837,30396644-30396751,30396933-303971... 76 3e-14
03_03_0128 - 14677152-14677296,14677381-14677457,14679836-14680312 63 3e-10
02_05_0873 - 32372143-32372287,32372678-32372754,32372863-323730... 63 3e-10
07_03_1385 + 26189034-26189294,26189427-26189636,26191016-261910... 62 6e-10
09_04_0676 - 19383757-19383890,19384308-19384415,19384493-193846... 60 3e-09
09_04_0359 + 16941904-16942110,16943636-16943785,16944084-169442... 58 7e-09
08_02_1381 - 26551920-26552053,26552963-26553070,26553154-265533... 56 5e-08
06_01_0751 + 5630036-5630233,5630623-5630718,5631420-5631629,563... 36 0.043
08_02_0963 + 23068851-23069042,23069262-23069414,23069590-230696... 30 2.2
07_03_0647 - 20253380-20253505,20253718-20253727,20253864-202539... 28 8.7
07_03_0642 - 20216944-20217069,20217282-20217291,20217428-202175... 28 8.7
>03_05_1098 -
30395704-30395837,30396644-30396751,30396933-30397119,
30398127-30398330
Length = 210
Score = 76.2 bits (179), Expect = 3e-14
Identities = 38/133 (28%), Positives = 67/133 (50%)
Frame = -2
Query: 770 APDGNVIHKAERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKVVMFNLEIGEPQTKSGNE 591
+P GN ++ + +S + F AP G Y +CF N + P+ V F + +G +
Sbjct: 71 SPGGNTVYTLKGKSGDKFEFKAPRGGMYKFCFHNPYGA--PETVSFYIHVGHIPNEHNLA 128
Query: 590 NEADHNKLEDMIKELATTLRTIKHDQEYMQVRDRIHRSINESTNSRVVMWSIFEASVLLV 411
+ + + I EL L ++ +Q+Y++ R+ HR NEST RV+ ++I E +
Sbjct: 129 KDEHLDPINVKIAELKEALESVTAEQKYLKAREARHRHTNESTRRRVMFYTIAEYLAFMG 188
Query: 410 MTIGQVYYLKRFF 372
+ QV Y++R F
Sbjct: 189 ASALQVVYIRRLF 201
>03_03_0128 - 14677152-14677296,14677381-14677457,14679836-14680312
Length = 232
Score = 62.9 bits (146), Expect = 3e-10
Identities = 40/143 (27%), Positives = 71/143 (49%), Gaps = 4/143 (2%)
Frame = -2
Query: 770 APDGNVIHKAERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKVVM-FNLEIG---EPQTK 603
+P GN +H +E SG + F+A AG Y CF T V F+ G T
Sbjct: 92 SPYGNSLHYSENVQSGNFAFTASEAGDYLACFWAPDHRPTATVGFEFDWRSGVSARDWTN 151
Query: 602 SGNENEADHNKLEDMIKELATTLRTIKHDQEYMQVRDRIHRSINESTNSRVVMWSIFEAS 423
+ + D ++E +K+L T+ +I + Y++ R+ + +N TNSR+ F +
Sbjct: 152 VAKKGQVDMMEVE--LKKLEDTINSIHEEMFYLRAREEEMQELNRRTNSRMAWLGFFSLA 209
Query: 422 VLLVMTIGQVYYLKRFFEVQRVV 354
+ L + Q+++LK FFE ++++
Sbjct: 210 ICLSVAGLQLWHLKNFFERKKLL 232
>02_05_0873 -
32372143-32372287,32372678-32372754,32372863-32373072,
32374645-32374869
Length = 218
Score = 62.9 bits (146), Expect = 3e-10
Identities = 37/142 (26%), Positives = 76/142 (53%), Gaps = 3/142 (2%)
Frame = -2
Query: 770 APDGNVIHKAERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKVVMFNLEIGEPQTKSGNE 591
+P GN +H E + G + F+ AG Y CF S+ + NL+ +
Sbjct: 78 SPYGNTLHHNENATVGQFAFTTSEAGNYLACFWID-SAEKGSGISINLDWKIGIAAKDWD 136
Query: 590 NEADHNKLEDM---IKELATTLRTIKHDQEYMQVRDRIHRSINESTNSRVVMWSIFEASV 420
A K+E + +++L +++I + Y++ R+ R+++E TN+RV +SI SV
Sbjct: 137 VIAKKEKIEGVELELRKLEVAVQSIHQNMIYLKAREAEMRTVSEKTNARVAWFSILSLSV 196
Query: 419 LLVMTIGQVYYLKRFFEVQRVV 354
+V++I Q+++L+ +F+ ++++
Sbjct: 197 CIVVSILQLWHLQGYFQKKKLI 218
>07_03_1385 +
26189034-26189294,26189427-26189636,26191016-26191092,
26191196-26191340
Length = 230
Score = 62.1 bits (144), Expect = 6e-10
Identities = 38/142 (26%), Positives = 70/142 (49%), Gaps = 3/142 (2%)
Frame = -2
Query: 770 APDGNVIHKAERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKVVMFNLEIGEPQTKSGNE 591
+P GN +H AE SG + F+A AG Y CF P + F +
Sbjct: 90 SPYGNSVHYAENVPSGNFAFTATEAGDYLACFWAP-DHKPPVSIGFEFDWRSGVAAKDWS 148
Query: 590 NEADHNKLEDM---IKELATTLRTIKHDQEYMQVRDRIHRSINESTNSRVVMWSIFEASV 420
N A +++ M +K+L T+++I + Y++ R+ +++N+ TNSR+ +
Sbjct: 149 NVAKKGQVDVMEMELKKLEETIKSIHEEMFYLREREEEMQNLNKQTNSRMAWLGFLSLGI 208
Query: 419 LLVMTIGQVYYLKRFFEVQRVV 354
L + Q+++LK FFE ++++
Sbjct: 209 CLSVAGLQLWHLKTFFERKKLL 230
>09_04_0676 -
19383757-19383890,19384308-19384415,19384493-19384679,
19384937-19385143
Length = 211
Score = 59.7 bits (138), Expect = 3e-09
Identities = 35/133 (26%), Positives = 66/133 (49%)
Frame = -2
Query: 767 PDGNVIHKAERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKVVMFNLEIGEPQTKSGNEN 588
P+GN IH + + S + F G + +CF+NK S + V F++ + +
Sbjct: 73 PNGNQIHDSRDKISDKFEFIVHRRGVHRFCFTNK--SPYHETVDFDVLVSHFSYYDQHAK 130
Query: 587 EADHNKLEDMIKELATTLRTIKHDQEYMQVRDRIHRSINESTNSRVVMWSIFEASVLLVM 408
+ + L + I +L L I+ +Q +++ + +NE+ + R V + FE++ L+
Sbjct: 131 DEHFSALFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAVHKAFFESAALIAA 190
Query: 407 TIGQVYYLKRFFE 369
++ QVY L R FE
Sbjct: 191 SVVQVYLLHRLFE 203
>09_04_0359 +
16941904-16942110,16943636-16943785,16944084-16944293,
16944376-16944452,16944554-16944698
Length = 262
Score = 58.4 bits (135), Expect = 7e-09
Identities = 34/142 (23%), Positives = 76/142 (53%), Gaps = 3/142 (2%)
Frame = -2
Query: 770 APDGNVIHKAERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKVVMFNLEIGEPQTKSGNE 591
+P G+++H ++ S+G ++F+ AG Y CFS + VV NL+ +
Sbjct: 122 SPFGDIVHHKQKVSTGQFSFTTAEAGNYLACFSADGRNKR-LVVKLNLDWRVGIATKDWD 180
Query: 590 NEADHNKLEDM---IKELATTLRTIKHDQEYMQVRDRIHRSINESTNSRVVMWSIFEASV 420
+ A KLE + + +L T+++ I + ++ ++ R +E TN+R SI V
Sbjct: 181 SVAKKEKLEGVELELVKLETSVQAIHENLLLLRSKEANMRDTSEKTNARATWLSIISLIV 240
Query: 419 LLVMTIGQVYYLKRFFEVQRVV 354
+++++ Q+++L+++F ++++
Sbjct: 241 CIIVSVLQLWHLQQYFRKKKLI 262
>08_02_1381 -
26551920-26552053,26552963-26553070,26553154-26553340,
26554107-26554316
Length = 212
Score = 55.6 bits (128), Expect = 5e-08
Identities = 32/133 (24%), Positives = 66/133 (49%)
Frame = -2
Query: 767 PDGNVIHKAERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKVVMFNLEIGEPQTKSGNEN 588
P+G + + ++S + F G + +CF+NK S + V F++ +G +
Sbjct: 74 PNGAQVRDSRDKTSDKFEFIVQKRGVHRFCFTNK--SPYHETVDFDVHVGHFSYFDQHAK 131
Query: 587 EADHNKLEDMIKELATTLRTIKHDQEYMQVRDRIHRSINESTNSRVVMWSIFEASVLLVM 408
+ L + I +L L I+ +Q +++ + +NE+ + R V ++ E++ L+
Sbjct: 132 DEHFAPLFEQIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAVHKALLESAALIAA 191
Query: 407 TIGQVYYLKRFFE 369
++ QVY L+R FE
Sbjct: 192 SVIQVYLLRRLFE 204
>06_01_0751 +
5630036-5630233,5630623-5630718,5631420-5631629,
5631735-5631811,5632204-5632222,5632304-5632348
Length = 214
Score = 35.9 bits (79), Expect = 0.043
Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 3/102 (2%)
Frame = -2
Query: 770 APDGNVIHKAERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKVVMFNLEIGEPQTKSGNE 591
+P GN +H E ++G + F+ AG Y CF S V NL+ +
Sbjct: 101 SPYGNTVHHNENATTGQFAFTTSEAGNYLACFWLD-SPEKGSGVSLNLDWKIGIAAKDWD 159
Query: 590 NEADHNKLEDM---IKELATTLRTIKHDQEYMQVRDRIHRSI 474
A K+E + +++L + +I H+ Y++ R+ R++
Sbjct: 160 TVAKKEKIEGVELELRKLEAAVESIHHNLLYLKAREAEMRTL 201
>08_02_0963 +
23068851-23069042,23069262-23069414,23069590-23069666,
23069744-23069762,23070182-23070202
Length = 153
Score = 30.3 bits (65), Expect = 2.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 770 APDGNVIHKAERESSGIYTFSAPTAGKYTYCFS 672
+P G V+H E+ G ++F+ G Y CFS
Sbjct: 75 SPYGKVLHHREKVMQGQFSFNTAEPGVYLACFS 107
>07_03_0647 -
20253380-20253505,20253718-20253727,20253864-20253977,
20254063-20254382
Length = 189
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 695 GKYTYCFSNKMSSMTPKVVMFNLEIGEPQTKSGNENE 585
GK S ++S+TP+V + + G+PQ K GN +
Sbjct: 34 GKVKRSDSVPVASITPRVALQTVNGGKPQRKHGNRQQ 70
>07_03_0642 -
20216944-20217069,20217282-20217291,20217428-20217541,
20217627-20217946
Length = 189
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 695 GKYTYCFSNKMSSMTPKVVMFNLEIGEPQTKSGNENE 585
GK S ++S+TP+V + + G+PQ K GN +
Sbjct: 34 GKVKRSDSVPVASITPRVALQTVNGGKPQRKHGNRQQ 70
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,517,030
Number of Sequences: 37544
Number of extensions: 381405
Number of successful extensions: 734
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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