Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15m07
         (894 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF014940-5|AAB63937.1|  203|Caenorhabditis elegans Suppressor/en...   185   3e-47
AF039713-7|AAB96722.1|  203|Caenorhabditis elegans Hypothetical ...    81   1e-15
AL117207-7|CAB60397.1|  211|Caenorhabditis elegans Hypothetical ...    66   3e-11
Z74035-1|CAA98480.1|  204|Caenorhabditis elegans Hypothetical pr...    53   2e-07
Z68316-4|CAA92683.1|  234|Caenorhabditis elegans Hypothetical pr...    40   0.003
AF016444-1|AAN73876.2|  330|Caenorhabditis elegans Serpentine re...    29   3.4  
Z77665-8|CAB01224.2|  135|Caenorhabditis elegans Hypothetical pr...    29   5.9  
AF016656-3|AAB66037.2|  515|Caenorhabditis elegans Hypothetical ...    29   5.9  

>AF014940-5|AAB63937.1|  203|Caenorhabditis elegans
           Suppressor/enhancer of lin-12 protein9 protein.
          Length = 203

 Score =  185 bits (451), Expect = 3e-47
 Identities = 84/142 (59%), Positives = 114/142 (80%), Gaps = 4/142 (2%)
 Frame = -2

Query: 767 PDGNVIHKAERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKVVMFNLEIGEPQTKS---- 600
           PD   I+K ERESSG +TF+A   G YTYCF NKMS+MTPK VMF +EI EP  ++    
Sbjct: 62  PDNKEIYKGERESSGKFTFAAHMDGVYTYCFGNKMSTMTPKAVMFTVEITEPHQQAPGAA 121

Query: 599 GNENEADHNKLEDMIKELATTLRTIKHDQEYMQVRDRIHRSINESTNSRVVMWSIFEASV 420
            N++ AD+ KLE+M++EL++ L ++KH+QEYM+VR+R+HR+INE+TNSRVVMW+ FEA V
Sbjct: 122 ANQDAADNAKLEEMVRELSSALMSVKHEQEYMEVRERVHRNINENTNSRVVMWAAFEAFV 181

Query: 419 LLVMTIGQVYYLKRFFEVQRVV 354
           L+ MT+GQ++YLKRFFEV+ +V
Sbjct: 182 LVGMTVGQIFYLKRFFEVRTMV 203



 Score = 58.0 bits (134), Expect = 8e-09
 Identities = 24/40 (60%), Positives = 32/40 (80%)
 Frame = -1

Query: 885 VDAHAXECFYENVEADTKLGLSFEIAEGGFLDIDVIILGP 766
           VDA+  +CF++ + + TK+GL FE+AEGGFLDIDV I GP
Sbjct: 23  VDANEEQCFFDRLTSGTKMGLMFEVAEGGFLDIDVKITGP 62


>AF039713-7|AAB96722.1|  203|Caenorhabditis elegans Hypothetical
           protein F57B10.5 protein.
          Length = 203

 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 42/138 (30%), Positives = 73/138 (52%), Gaps = 2/138 (1%)
 Frame = -2

Query: 767 PDGNVIHKAERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKVVMFNLEIGEPQTKSGNEN 588
           P+G V++K  ++      F A   G Y  CFSN+ S+ + K+V  + + G+         
Sbjct: 63  PNGKVLYKDTKKQYDSINFKAEVEGTYKACFSNEFSTFSHKIVYMDWQFGDQNALHAAVT 122

Query: 587 EADH--NKLEDMIKELATTLRTIKHDQEYMQVRDRIHRSINESTNSRVVMWSIFEASVLL 414
           +  H   +LE+    +   LRTI   Q + ++R+   R   E  N RV++WS+ +++V++
Sbjct: 123 QGAHAMTQLENYAVAIGDKLRTIDDYQTHHRLREATGRKRAEELNERVMIWSLGQSAVVV 182

Query: 413 VMTIGQVYYLKRFFEVQR 360
            + IGQV+ LK FF  +R
Sbjct: 183 FIGIGQVFLLKSFFNDKR 200



 Score = 37.5 bits (83), Expect = 0.013
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -1

Query: 876 HAXECFYENVEADTKLGLSFEIAEGGFLDIDVIILGP 766
           +A +CFYE+++ D      F++  GG  D+D+II  P
Sbjct: 27  NANQCFYEDLKKDVDTVFEFQVVTGGHYDVDLIIEDP 63


>AL117207-7|CAB60397.1|  211|Caenorhabditis elegans Hypothetical
           protein Y60A3A.9 protein.
          Length = 211

 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 41/142 (28%), Positives = 71/142 (50%), Gaps = 4/142 (2%)
 Frame = -2

Query: 767 PDGNVIHKAERESSGIYTFSAPTAGKYTYC-FSNKMSSMTPKVVMFNLEIGEPQTKSGNE 591
           P+  VI      + G +TF++ T G++  C +SN  +      +  +L+I          
Sbjct: 70  PEDKVILSKLYTAEGRFTFTSNTPGEHVICIYSNSTAWFNGAQLRVHLDIQAGDHAQDYA 129

Query: 590 NEADHNKLEDM---IKELATTLRTIKHDQEYMQVRDRIHRSINESTNSRVVMWSIFEASV 420
             A  +KL ++   I++L   +  I  +Q Y + R+   R  +ESTNSRV  WSI +  V
Sbjct: 130 QIAQKDKLNELQLRIRQLLDQVDQITKEQNYQRYREERFRQTSESTNSRVFYWSIAQVVV 189

Query: 419 LLVMTIGQVYYLKRFFEVQRVV 354
           L +    Q+ +L+ FFE +++V
Sbjct: 190 LAITGAWQMRHLRGFFEAKKLV 211


>Z74035-1|CAA98480.1|  204|Caenorhabditis elegans Hypothetical
           protein F47G9.1 protein.
          Length = 204

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 40/142 (28%), Positives = 70/142 (49%), Gaps = 6/142 (4%)
 Frame = -2

Query: 761 GNVIHKAER--ESSGIYTFSAPTAGKYTYCFSNKMSSMTP---KVVMFNLEIGEPQTKSG 597
           G+ ++K E   +  G + F+A     +  C  N   +  P   + V   L+ G       
Sbjct: 62  GHTLYKRENFADLKGKFAFTADEYDIFEICIENHPPAGHPGEKREVSLILKHGVEAKNYD 121

Query: 596 NENEADHNK-LEDMIKELATTLRTIKHDQEYMQVRDRIHRSINESTNSRVVMWSIFEASV 420
           +  +A+  K LE  ++ L     +I  D  +M+ R+   R+ NESTNSRV+  SIF    
Sbjct: 122 DIAKAEKLKPLEVELRRLEDMADSITKDFAFMRQREEEMRNTNESTNSRVLYLSIFSMLC 181

Query: 419 LLVMTIGQVYYLKRFFEVQRVV 354
           LL + I QV +L+ +F+ ++++
Sbjct: 182 LLGLAIWQVLFLRNYFKSKKLI 203


>Z68316-4|CAA92683.1|  234|Caenorhabditis elegans Hypothetical
           protein K08E4.6 protein.
          Length = 234

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 36/148 (24%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
 Frame = -2

Query: 758 NVIHKAERESSGIYTFSAPTAGKYTYCFSNKMSSMTPKVVMF---------NLEIGE--P 612
           N++ + + +  G +       G Y  CF N  S  + KVV F         NL+  +   
Sbjct: 72  NILKQDQLKVDGSHRIELNQPGDYQVCFDNSFSYQSRKVVFFEIFLFDAHGNLDEADLSA 131

Query: 611 QTKSGNENEADHNKLEDMIKELATTLRTIKHDQ---EYMQVRDRIH----RSINESTNSR 453
             ++ ++  A  N+L   I E       IK++    EY Q   R H    R++  +   R
Sbjct: 132 MARTDSDLSAKMNELGVTIDEFHRRANGIKNNLNKVEYHQALLRAHEARDRAVMSANFDR 191

Query: 452 VVMWSIFEASVLLVMTIGQVYYLKRFFE 369
           V  WS+    V++ +   QV+ ++  FE
Sbjct: 192 VTFWSVVHTLVMVGVAGVQVFMIRSLFE 219


>AF016444-1|AAN73876.2|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 9 protein.
          Length = 330

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +3

Query: 72  YLNKINSALSHASTINTLTIRYLIKYCLVDSLLVEKYIDLHEIFL 206
           YL K+N  L      ++L+ RYL++  L     ++++ DL  IF+
Sbjct: 208 YLFKLNEKLRAKQLTSSLSNRYLLEQNLKSMRTLKRFADLQSIFM 252


>Z77665-8|CAB01224.2|  135|Caenorhabditis elegans Hypothetical
           protein K02E11.7 protein.
          Length = 135

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -1

Query: 564 GHDQRTCYYIKNYQTRSRVYAGA*SY 487
           G +++TC Y +N QT+++V AG  +Y
Sbjct: 72  GKNKKTCGYWENIQTKAKVVAGKTTY 97


>AF016656-3|AAB66037.2|  515|Caenorhabditis elegans Hypothetical
           protein C35A11.4 protein.
          Length = 515

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 513 LIVFDXXXXXXKFFDHVLKFIMVSFIFITRF 605
           LI+F       KF +HVL FI++ FI I  F
Sbjct: 348 LIIFALMFTFYKFENHVLGFILICFICIFTF 378


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,147,419
Number of Sequences: 27780
Number of extensions: 391844
Number of successful extensions: 913
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)