Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15m06
(658 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 28 1.0
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo... 27 1.8
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom... 27 3.1
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 26 4.2
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 26 5.5
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 25 7.3
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 7.3
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr... 25 9.6
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 25 9.6
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 25 9.6
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/49 (24%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = -3
Query: 176 ELVQSRNRANPYNPN*TKRTKKIIQNPFQKWLLHN--FEISKSSLSYAI 36
++++ + ++ +NP+ +++ K+ + F W+L I K+S YAI
Sbjct: 397 DIIEEEDDSDEFNPSVSRKKAKLTSSQFSNWMLVTGVTGIGKTSCLYAI 445
>SPAC637.11 |suv3||ATP-dependent RNA helicase
Suv3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -3
Query: 206 GSGTLTLSAVELVQSRNRANPYNPN*TKRTKKIIQNPFQK 87
G T+ + ++ Q RA +NPN +K++ I+ +QK
Sbjct: 419 GVSTIDIPVPQIKQIAGRAGRHNPNGSKQSAGIVTTLYQK 458
>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 564
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -1
Query: 469 LRRFDVKEKQRKRQSVTEQSRCPSNG 392
L RF VKEK R + +CPS G
Sbjct: 30 LERFRVKEKSRTFKDCVNVYQCPSKG 55
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = -3
Query: 119 TKKIIQNPFQK--WLLHNFEISKSSL 48
T +I NP ++ W LHNFE SK L
Sbjct: 284 TSSMITNPARQAGWKLHNFEDSKDVL 309
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 5.5
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Frame = -3
Query: 278 MQTLWLMSEMS*NFLV----LQNSVDQVGSGTLTLSAVELVQSRNRANPYNPN*TKRTKK 111
+Q + L+S+M+ N + N + Q G+ T + V + NP NP+ T +
Sbjct: 461 LQQVQLLSQMAGNQMANIQYTMNGMQQTGASPNTALNISQVNMYAQNNPVNPSTTNPFQN 520
Query: 110 IIQNP 96
++ P
Sbjct: 521 FLRQP 525
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.4 bits (53), Expect = 7.3
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 299 MTTSTARESPPKLFLSVPISTLYGVFGSTNASITWT 406
MTT+T P + +V ++ GS++ASIT T
Sbjct: 574 MTTTTCSSRPEETISTVSTTSTVSESGSSSASITST 609
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 25.4 bits (53), Expect = 7.3
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -1
Query: 610 GVIVRVGRRRSALLQSNANRRFKRSGRLREYCVSNRNPAE 491
GVIV + R+ LQS+A F + ++R+ + + +P E
Sbjct: 1557 GVIVGIDRKSGKPLQSHAKAPFMATFKIRKEKLVDADPEE 1596
>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 808
Score = 25.0 bits (52), Expect = 9.6
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 358 NFVRGVWFDERFHYLDIG 411
+F RG ++DE FH L +G
Sbjct: 404 HFPRGFYWDEGFHLLPVG 421
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.0 bits (52), Expect = 9.6
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -3
Query: 203 SGTLTLSAVELVQSRNRANPYNPN*TK--RTKKIIQNPF 93
SG + +EL + RNR Y N +K T + +NPF
Sbjct: 252 SGENVRARIELARERNRKRDYVSNLSKGHTTNALEENPF 290
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 25.0 bits (52), Expect = 9.6
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -1
Query: 454 VKEKQRKRQSVTEQSRCP--SNGSVRRTKHPVQS*DRYR 344
++EKQRK++ + EQ P S KHPV D ++
Sbjct: 1241 LEEKQRKKRRMREQGEMPPWSPRWFSAAKHPVTGEDYWQ 1279
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,480,846
Number of Sequences: 5004
Number of extensions: 46458
Number of successful extensions: 132
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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