Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15m05
(218 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces pomb... 25 1.0
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch... 25 1.4
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc... 25 1.8
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo... 24 3.1
SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p... 24 3.1
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc... 23 4.1
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy... 23 4.1
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom... 23 7.2
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 23 7.2
SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans... 23 7.2
SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr 1|||... 23 7.2
SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces pomb... 23 7.2
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch... 22 9.6
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|... 22 9.6
>SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 376
Score = 25.4 bits (53), Expect = 1.0
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +1
Query: 169 EKYLIFGNQAHFSPAG 216
E LI GN HFSP G
Sbjct: 145 ENKLILGNDIHFSPTG 160
>SPAC7D4.11c |sec39||secretory pathway protein Sec39
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 769
Score = 25.0 bits (52), Expect = 1.4
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = -3
Query: 189 PENQIFFTKSTNCSRKTNSDP--DPELMVDRITT 94
PENQ+ + + N S N DP E + ++T+
Sbjct: 720 PENQVLYEGNLNSSLSLNEDPSVSDENLTQKVTS 753
>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 555
Score = 24.6 bits (51), Expect = 1.8
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -3
Query: 162 STNCSRKTNSDPD-PELMVDRITTITPIRRCLFISQYLK 49
ST+ +R+ + P + ++ ITP +RC F +Q +K
Sbjct: 183 STSSARQNQTGLSYPSVSFSLLSQITPHQRCSFYAQVIK 221
>SPAC1952.05 |gcn5||histone acetyltransferase
Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 23.8 bits (49), Expect = 3.1
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -1
Query: 203 KCAWFPKIKYFSQKALIAAEK 141
+C PKIKY ++A +K
Sbjct: 269 QCTMIPKIKYLEANLILAIQK 289
>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 23.8 bits (49), Expect = 3.1
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -2
Query: 211 PGKSAPGSRKSNI 173
P KSAP RKSNI
Sbjct: 210 PPKSAPSKRKSNI 222
>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 898
Score = 23.4 bits (48), Expect = 4.1
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = +2
Query: 80 LIGVIVVILST--INSGSGSELVFRLQLVL 163
+IG I++ LS +NSGSG V+ L L L
Sbjct: 202 VIGWILLALSVTLVNSGSGVRAVYILLLAL 231
>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 384
Score = 23.4 bits (48), Expect = 4.1
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = -3
Query: 168 TKSTNCSRKTNSDPDPELMVDRITTITPIRRCLFISQYLK 49
T + S NS P + ++T +TP R L YL+
Sbjct: 304 TSVDSASTALNSYSTPNSVSRKLTNLTPAARRLVARSYLR 343
>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 554
Score = 22.6 bits (46), Expect = 7.2
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2
Query: 97 YYYTNKAMFVYKPIPKITFYLF 32
Y T + +YKP PK+T + F
Sbjct: 211 YCMTERFGVIYKPNPKLTPFSF 232
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 22.6 bits (46), Expect = 7.2
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +2
Query: 26 KQKQIKCYFRYWLINKHRLIGVIVVILSTINSGSGSELVFRLQLVLFVKNI 178
K+KQI F YWL N +I ++ S S+L R + V F K+I
Sbjct: 419 KRKQIFAEFIYWLYNSF----IIPILQSFFYITESSDL--RNRTVYFRKDI 463
>SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 22.6 bits (46), Expect = 7.2
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 2 NSGASTHLKQKQIKCYFRYWLINKHRLIGVIVVILS 109
N+G +T+ Q I WL KH + G +V LS
Sbjct: 92 NAGPNTNSSQFFITLAPTPWLDGKHTIFGRVVSGLS 127
>SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 309
Score = 22.6 bits (46), Expect = 7.2
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = -3
Query: 117 LMVDRITTITPIRRCLFISQYLK 49
+M+ +T+ T + F+SQY+K
Sbjct: 156 IMIGALTSTTMMAAAKFLSQYIK 178
>SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 414
Score = 22.6 bits (46), Expect = 7.2
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +1
Query: 160 AFCEKYLIFGNQAHFSPAG 216
+FC K L HFSP G
Sbjct: 184 SFCRKVLGQTGDGHFSPVG 202
>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 577
Score = 22.2 bits (45), Expect = 9.6
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +1
Query: 139 GFSAAISAFCEKYLIFGNQAHFSPA 213
G A SAFCE LI +F+ A
Sbjct: 99 GVLACFSAFCETNLILAVARNFNRA 123
>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
3|||Manual
Length = 700
Score = 22.2 bits (45), Expect = 9.6
Identities = 6/17 (35%), Positives = 14/17 (82%)
Frame = +2
Query: 32 KQIKCYFRYWLINKHRL 82
+++K +F Y+ IN+H++
Sbjct: 635 EKVKRFFHYYGINRHKM 651
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 954,692
Number of Sequences: 5004
Number of extensions: 16793
Number of successful extensions: 40
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 52
effective length of database: 2,102,270
effective search space used: 42045400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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