Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15l24
         (706 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    23   2.1  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    23   2.1  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    22   6.5  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    22   6.5  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   8.6  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   8.6  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -2

Query: 315 GDNAVLKGAFSNYL 274
           G NA  KGAFSN L
Sbjct: 268 GGNAFFKGAFSNIL 281


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -2

Query: 315 GDNAVLKGAFSNYL 274
           G NA  KGAFSN L
Sbjct: 268 GGNAFFKGAFSNIL 281


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 482 MHDIVFITIISRSQIYLFSDYLRAFSSKIH-LKFY 583
           M D+V  T   + +IYLFS +    +S +H L+ Y
Sbjct: 237 MLDVVSGTQKKKRKIYLFSGHESNIASVLHALQLY 271


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 482 MHDIVFITIISRSQIYLFSDYLRAFSSKIH-LKFY 583
           M D+V  T   + +IYLFS +    +S +H L+ Y
Sbjct: 252 MLDVVSGTQKKKRKIYLFSGHESNIASVLHALQLY 286


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 488 DIVFITIISRSQIYLFSDYLR 550
           DI   + + R ++YLF DY R
Sbjct: 30  DITSTSALYRLKLYLFCDYDR 50


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +2

Query: 422 PPFLEVFY*NTKY*TEQPILMHDIVFITIISRSQIYLFS 538
           PP L VF  NT    +Q  + HDI   T   +  +   S
Sbjct: 149 PPQLLVFDLNTSQLLKQVKIPHDIAVNTTTEKGALVTLS 187


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,879
Number of Sequences: 438
Number of extensions: 3863
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)