Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15l17
         (759 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S72487-2|AAD14106.1|  157|Homo sapiens orf3 5' of PD-ECGF/TP pro...    33   1.5  
AK123032-1|BAC85519.1|  274|Homo sapiens  factor.  protein.            31   6.0  

>S72487-2|AAD14106.1|  157|Homo sapiens orf3 5' of PD-ECGF/TP
           protein.
          Length = 157

 Score = 32.7 bits (71), Expect = 1.5
 Identities = 23/75 (30%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
 Frame = -1

Query: 681 RTNTTSCSQPHVLVWSQLQTPLCPCRFVPSFEQHLPA*SSWQEHPDQTSLRHDVAPHPIP 502
           R  T   + PH   WS    P  P R   S E HL       E P  T  R+ V P+P  
Sbjct: 58  RPPTPLSALPHSGTWSGPPGPWPPQRRTASREAHLGTPDLNPESPSDTLTRYSVPPYPDL 117

Query: 501 ERKRSRPE--SSTWL 463
           + +   P     +WL
Sbjct: 118 KSQTPNPRGFDKSWL 132


>AK123032-1|BAC85519.1|  274|Homo sapiens  factor.  protein.
          Length = 274

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
 Frame = +2

Query: 623 VCSCDQTKTCGCEQEVVFVLGVIHC---FFICYPLQLSVHYCHC 745
           VC C     C C    V+V G +H     ++C  +++ V  C C
Sbjct: 88  VCICVCAHVCTCVHSFVYVCGCVHVGMRVYLCEHVRMCVSLCAC 131


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,336,428
Number of Sequences: 237096
Number of extensions: 2390793
Number of successful extensions: 5946
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5938
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9183116696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)