Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15l16
         (749 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex det...    25   1.0  
DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex det...    25   1.0  
DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex det...    25   1.0  
DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex det...    25   1.0  
DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex det...    25   1.0  
DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex det...    25   1.0  
DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex det...    25   1.0  
DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex det...    25   1.0  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    25   1.0  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    25   1.0  
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    24   1.3  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    24   1.3  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   1.3  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    24   1.8  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    24   1.8  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    24   1.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   4.0  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    22   7.1  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    22   7.1  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    22   7.1  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   9.3  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   9.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   9.3  

>DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 21  NDITNKHNFPQQYHNFFKYN 80
           N ++N +N+   Y+N+ K+N
Sbjct: 86  NSLSNNYNYNNNYNNYNKHN 105


>DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 21  NDITNKHNFPQQYHNFFKYN 80
           N ++N +N+   Y+N+ K+N
Sbjct: 86  NSLSNNYNYNNNYNNYNKHN 105


>DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 21  NDITNKHNFPQQYHNFFKYN 80
           N ++N +N+   Y+N+ K+N
Sbjct: 86  NSLSNNYNYNNNYNNYNKHN 105


>DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 21  NDITNKHNFPQQYHNFFKYN 80
           N ++N +N+   Y+N+ K+N
Sbjct: 86  NSLSNNYNYNNNYNNYNKHN 105


>DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 21  NDITNKHNFPQQYHNFFKYN 80
           N ++N +N+   Y+N+ K+N
Sbjct: 86  NSLSNNYNYNNNYNNYNKHN 105


>DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 21  NDITNKHNFPQQYHNFFKYN 80
           N ++N +N+   Y+N+ K+N
Sbjct: 86  NSLSNNYNYNNNYNNYNKHN 105


>DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 21  NDITNKHNFPQQYHNFFKYN 80
           N ++N +N+   Y+N+ K+N
Sbjct: 86  NSLSNNYNYNNNYNNYNKHN 105


>DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 21  NDITNKHNFPQQYHNFFKYN 80
           N ++N +N+   Y+N+ K+N
Sbjct: 86  NSLSNNYNYNNNYNNYNKHN 105


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 21  NDITNKHNFPQQYHNFFKYN 80
           N ++N +N+   Y+N+ K+N
Sbjct: 319 NSLSNNYNYNNNYNNYNKHN 338


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 21  NDITNKHNFPQQYHNFFKYN 80
           N ++N +N+   Y+N+ K+N
Sbjct: 319 NSLSNNYNYNNNYNNYNKHN 338


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 21  NDITNKHNFPQQYHNFFKYN 80
           N ++N +N+   Y+N+ K+N
Sbjct: 86  NPLSNNYNYNNNYNNYNKHN 105


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 667 QWSNTNSAFTRRIAETIEIKNKLQLH 590
           QW N+ +A   +IAE +  KN L +H
Sbjct: 417 QWDNSINAGFSKIAENLLEKNWLPVH 442


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -3

Query: 477 PGPTGLTWRSVGTRLRTG 424
           PG TG T  S GTRL  G
Sbjct: 176 PGSTGTTTTSTGTRLLHG 193


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 468 LVLACSLVCATFSGCNLSSIAL 533
           L L C ++C T S  NL +IAL
Sbjct: 111 LWLTCDVLCCTASILNLCAIAL 132


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 468 LVLACSLVCATFSGCNLSSIAL 533
           L L C ++C T S  NL +IAL
Sbjct: 111 LWLTCDVLCCTASILNLCAIAL 132


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 468 LVLACSLVCATFSGCNLSSIAL 533
           L L C ++C T S  NL +IAL
Sbjct: 111 LWLTCDVLCCTASILNLCAIAL 132


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/42 (23%), Positives = 18/42 (42%)
 Frame = -2

Query: 466 RPHLEKCRDEAQNRLVQETCDLQQAMETVRARLATAEGTHQS 341
           +P  E+C +     +V ETC       T+ A  A    ++ +
Sbjct: 200 QPEDEECTEATAGAVVLETCQRNSNNSTITAGNANTNASNNN 241


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = +3

Query: 393 ACCRSHVSCTSLF*A-SSRH 449
           ACCR+H  C  +  A  S+H
Sbjct: 57  ACCRTHDMCPDVMSAGESKH 76


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = +3

Query: 393 ACCRSHVSCTSLF*A-SSRH 449
           ACCR+H  C  +  A  S+H
Sbjct: 62  ACCRTHDMCPDVMSAGESKH 81


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = +3

Query: 393 ACCRSHVSCTSLF*A-SSRH 449
           ACCR+H  C  +  A  S+H
Sbjct: 62  ACCRTHDMCPDVMSAGESKH 81


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +3

Query: 648 LFVLLHWSQIWV 683
           +F +L+WS IW+
Sbjct: 458 IFNILYWSFIWI 469


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 27  ITNKHNFPQQYHNFFKYN 80
           I N +N+   Y+N + YN
Sbjct: 90  IHNNNNYKYNYNNKYNYN 107


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 645 ALFVLLHWSQIWVADTLIRFSVSEHLHGLG 734
           AL+  + WS  W+  TLI  ++   +  LG
Sbjct: 53  ALYERVEWSGPWILVTLIVLAIVNVMVVLG 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,582
Number of Sequences: 438
Number of extensions: 4653
Number of successful extensions: 30
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)