Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15l15
         (777 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   4.2  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   7.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   7.3  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    21   9.7  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
 Frame = +2

Query: 482 KTIDRLGNDS---FQVLSHFSVKKIQSHWWCHFGFRV 583
           KT ++L  D    FQV     +K+  SH W    F+V
Sbjct: 678 KTTEKLSTDPNTHFQVNQSHGIKRSGSHSWEGDSFKV 714


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 230 FYLFNLLTSSLHFRLL 277
           +YLFNL  S L F +L
Sbjct: 70  YYLFNLAVSDLLFLIL 85


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 763 HFVVYKVSMNSKLM*IRKLYKREN 692
           HF +      SK+M   +LY R+N
Sbjct: 265 HFTIQSSVTTSKMMVSPRLYDRQN 288


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 51  LNDYRNPNTPTTTVIKISYFL 113
           +  Y   N P+T+ I I+YF+
Sbjct: 3   IQKYFGKNFPSTSFILINYFI 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,404
Number of Sequences: 438
Number of extensions: 3495
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)