Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15l13
         (789 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          24   1.9  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      24   1.9  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          24   1.9  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   3.2  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   3.2  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    22   5.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   7.5  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -3

Query: 715 QQWKKVNIDDVHLTLNKDEILYLHNYKDKLSRLGIE 608
           Q W     D V  ++ K  + Y H YK+ L +   E
Sbjct: 406 QMWSTSLRDPVFFSIYKTILDYYHKYKENLPKYTTE 441


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -3

Query: 715 QQWKKVNIDDVHLTLNKDEILYLHNYKDKLSRLGIE 608
           Q W     D V  ++ K  + Y H YK+ L +   E
Sbjct: 406 QMWSTSLRDPVFFSIYKTILDYYHKYKENLPKYTTE 441


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -3

Query: 715 QQWKKVNIDDVHLTLNKDEILYLHNYKDKLSRLGIE 608
           Q W     D V  ++ K  + Y H YK+ L +   E
Sbjct: 32  QMWSTSLRDPVFFSIYKTILDYYHKYKENLPKYTTE 67


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
 Frame = +2

Query: 479 DVYFFGYNFFYSLYDFLHLSRDFSQY----*LWYRTKYYLVITQYIP 607
           DVY FG  F+Y     + L   F Q+     LW   K  L+I    P
Sbjct: 775 DVYAFGILFWYLCAGHVRLPYTFEQFHNKELLWTSVKKALMIVGIRP 821


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
 Frame = +2

Query: 479 DVYFFGYNFFYSLYDFLHLSRDFSQY----*LWYRTKYYLVITQYIP 607
           DVY FG  F+Y     + L   F Q+     LW   K  L+I    P
Sbjct: 813 DVYAFGILFWYLCAGHVRLPYTFEQFHNKELLWTSVKKALMIVGIRP 859


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -3

Query: 274 VKNNNEYKINLSKLKEYKLKNLIRRI 197
           + NNN YK N +    Y   N  +++
Sbjct: 90  IHNNNNYKYNYNNKYNYNNNNYNKKL 115


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -3

Query: 724 LQKQQWKKVNIDDVHLTLNKDEILYLHNYKDKLSRLGIEWNILGNDQII 578
           L+  +WK    D      + + +L  H Y  +LSR  I+  IL N  II
Sbjct: 746 LKSPEWK----DLAKKARSVNHLLTHHEYDYELSRGYIDEKILENQNII 790


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,576
Number of Sequences: 438
Number of extensions: 4873
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)