Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15l04
         (812 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    27   4.2  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    27   4.2  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    27   4.2  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    27   4.2  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   7.3  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    25   9.7  

>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -2

Query: 703 IPQVRVPFSNCPRSTEVILISVMFSLMLFSHDNRYVFFFVFSATHVSF 560
           IP +   +SNC     V++ S++ SL L S    + FF VFS  +  F
Sbjct: 261 IPMIEF-YSNC-----VLVQSLILSLFLISFGYFFTFFAVFSVINYGF 302


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -2

Query: 703 IPQVRVPFSNCPRSTEVILISVMFSLMLFSHDNRYVFFFVFSATHVSF 560
           IP +   +SNC     V++ S++ SL L S    + FF VFS  +  F
Sbjct: 261 IPMIEF-YSNC-----VLVQSLILSLFLISFGYFFTFFAVFSVINYGF 302


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -2

Query: 703 IPQVRVPFSNCPRSTEVILISVMFSLMLFSHDNRYVFFFVFSATHVSF 560
           IP +   +SNC     V++ S++ SL L S    + FF VFS  +  F
Sbjct: 261 IPMIEF-YSNC-----VLVQSLILSLFLISFGYFFTFFAVFSVINYGF 302


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -2

Query: 703 IPQVRVPFSNCPRSTEVILISVMFSLMLFSHDNRYVFFFVFSATHVSF 560
           IP +   +SNC     V++ S++ SL L S    + FF VFS  +  F
Sbjct: 261 IPMIEF-YSNC-----VLVQSLILSLFLISFGYFFTFFAVFSVINYGF 302


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = -2

Query: 706 TIPQVRVPFSNCPRSTEVILISVMFSLMLFSH--DNRYVFFFVFSATH 569
           +IP+  V  S   + + +ILIS+  SL+LF    + R +  + F + H
Sbjct: 496 SIPRGYVYLSEIKQYSSLILISLWISLILFVSFLNRRLILHYSFESVH 543


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 73  TYLHFIHNLFKRP*NVKLHIYWNF 144
           T+LHF+HN F R   + + ++W F
Sbjct: 416 TWLHFLHN-FSRIWILHISVFWYF 438


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,771,907
Number of Sequences: 5004
Number of extensions: 51228
Number of successful extensions: 109
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)