Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15l01
         (847 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    29   1.1  
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc...    28   1.9  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    27   2.5  
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    27   4.4  
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc...    27   4.4  
SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch...    26   5.8  
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    26   5.8  

>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 32  IIYGN-YILYKISTINPVISGFYNMYIL*YLMFYTQ 136
           +IY N Y LY I  I P+I  F+   ++ +L+ Y+Q
Sbjct: 1   MIYINFYELYNIKNIRPLIPSFHVCLLIMFLILYSQ 36


>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
           Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = -2

Query: 846 GSQFVDQLSGT---RQFDDFVEPGYINFYTVSPN 754
           GSQ +D ++G     Q DDF  PG  N + +SP+
Sbjct: 444 GSQLMDPVTGVVFNDQMDDFSIPGASNAFNLSPS 477


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +2

Query: 434  YGNLHTEASVQIALVAS 484
            YGNLHTE+S+ +A V S
Sbjct: 1835 YGNLHTESSLSLASVMS 1851


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +2

Query: 503 CTEMCSGGHDPMVQKLSQAFCSLISIFPVEA-KFSQVIALGSSPTIVVLRL 652
           CT +  GGH  +V  L     +L SI    A K+S ++AL     +V+ ++
Sbjct: 528 CTLITHGGHLVLVDDLKHKLANLHSILEDRASKYSSMLALQGKLDLVLSQI 578


>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 385 SIKSRSQPRNYSDFFVSRNILTAGIKFGEALFFPTDS 275
           SIKS  Q +N+S+ F  +N+    +   + L FP D+
Sbjct: 129 SIKSILQFQNFSNIFAKKNLFPK-VSKSDVLLFPRDA 164


>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = -2

Query: 846 GSQFVDQLSG---TRQFDDFVEPGYINFYTVSPN 754
           GSQ ++  +G       DDF  PG +N + +SP+
Sbjct: 465 GSQLLEPETGIILNDHMDDFASPGIVNAFGLSPS 498


>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/42 (30%), Positives = 26/42 (61%)
 Frame = -3

Query: 812 DSLTTSWNLVILISTQLVPITFMYTMITEESEFLEVRVGLEV 687
           DSL T  ++V +++ +L+P+T++ T    E+  L    GL++
Sbjct: 146 DSLVTK-DIVSVLNEELLPLTYLVTPNIPEAIVLAKNQGLDI 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,508,288
Number of Sequences: 5004
Number of extensions: 72175
Number of successful extensions: 162
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)