Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15k24
         (354 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X03363-1|CAA27060.1| 1255|Homo sapiens protein ( Human c-erb-B-2...    30   2.4  
M11730-1|AAA75493.1| 1255|Homo sapiens protein ( Human tyrosine ...    30   2.4  
AY208911-1|AAO18082.1| 1255|Homo sapiens v-erb-b2 erythroblastic...    30   2.4  
AK126016-1|BAC86394.1|  172|Homo sapiens protein ( Homo sapiens ...    29   3.1  

>X03363-1|CAA27060.1| 1255|Homo sapiens protein ( Human c-erb-B-2
           mRNA. ).
          Length = 1255

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
 Frame = -1

Query: 246 GDISSSLVHHKLVQYNAIPFMKRVKNYFYSSA------DNKIITGIQALDS-LNSKATVN 88
           GD +S+    +  Q      ++ +  Y Y SA      D  +   +Q +   +      +
Sbjct: 383 GDPASNTAPLQPEQLQVFETLEEITGYLYISAWPDSLPDLSVFQNLQVIRGRILHNGAYS 442

Query: 87  ITAGGVGYPYVNMRMKSERGSGLSYDHRN 1
           +T  G+G  ++ +R   E GSGL+  H N
Sbjct: 443 LTLQGLGISWLGLRSLRELGSGLALIHHN 471


>M11730-1|AAA75493.1| 1255|Homo sapiens protein ( Human tyrosine
           kinase-type receptor (HER2) mRNA, complete cds. ).
          Length = 1255

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
 Frame = -1

Query: 246 GDISSSLVHHKLVQYNAIPFMKRVKNYFYSSA------DNKIITGIQALDS-LNSKATVN 88
           GD +S+    +  Q      ++ +  Y Y SA      D  +   +Q +   +      +
Sbjct: 383 GDPASNTAPLQPEQLQVFETLEEITGYLYISAWPDSLPDLSVFQNLQVIRGRILHNGAYS 442

Query: 87  ITAGGVGYPYVNMRMKSERGSGLSYDHRN 1
           +T  G+G  ++ +R   E GSGL+  H N
Sbjct: 443 LTLQGLGISWLGLRSLRELGSGLALIHHN 471


>AY208911-1|AAO18082.1| 1255|Homo sapiens v-erb-b2 erythroblastic
           leukemia viral oncogene homolog 2, neuro/glioblastoma d
           protein.
          Length = 1255

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
 Frame = -1

Query: 246 GDISSSLVHHKLVQYNAIPFMKRVKNYFYSSA------DNKIITGIQALDS-LNSKATVN 88
           GD +S+    +  Q      ++ +  Y Y SA      D  +   +Q +   +      +
Sbjct: 383 GDPASNTAPLQPEQLQVFETLEEITGYLYISAWPDSLPDLSVFQNLQVIRGRILHNGAYS 442

Query: 87  ITAGGVGYPYVNMRMKSERGSGLSYDHRN 1
           +T  G+G  ++ +R   E GSGL+  H N
Sbjct: 443 LTLQGLGISWLGLRSLRELGSGLALIHHN 471


>AK126016-1|BAC86394.1|  172|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44028 fis, clone TESTI4027516. ).
          Length = 172

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = -1

Query: 132 GIQALDSLNSKATVNITAGGVGYPYVNMRMKSERGSGLSYDHRN 1
           G++ L S  + +  N +AGG  YP +N R  S  G G SY   N
Sbjct: 7   GLRHLFSAPAGSRCNSSAGGRSYPQINGRCNSSAG-GRSYPQIN 49



 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -1

Query: 90  NITAGGVGYPYVNMRMKSERGSGLSYDHRN 1
           N +AGG  YP +N R  S  G G SY   N
Sbjct: 53  NSSAGGRSYPQINRRCNSSAG-GRSYSQMN 81


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,373,032
Number of Sequences: 237096
Number of extensions: 981228
Number of successful extensions: 1954
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1954
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2075554296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)