Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15k23
(714 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 23 2.2
EF032397-1|ABM97933.1| 200|Apis mellifera arginine kinase protein. 23 2.9
AF023619-1|AAC39040.1| 355|Apis mellifera arginine kinase protein. 23 2.9
AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein. 22 5.0
AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein. 22 5.0
AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein. 22 5.0
AF080430-1|AAC28863.2| 208|Apis mellifera ribosomal protein S8 ... 22 5.0
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase... 22 6.6
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.8
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.8
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.8
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.8
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.8
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.8
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 8.8
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 8.8
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 23.4 bits (48), Expect = 2.2
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Frame = -2
Query: 677 VPCD---KAPIIIYDNEGRKNPLSIQAFMSPKWGGVVIASPPA---EQCSQQVREFEP 522
VP D + I++Y+N +++ + + G+V+ PPA CS V EF P
Sbjct: 105 VPSDHIWRPDIVLYNNADGNYEVTLMTKATVYYSGLVVWQPPAVYKSSCSIDV-EFFP 161
>EF032397-1|ABM97933.1| 200|Apis mellifera arginine kinase protein.
Length = 200
Score = 23.0 bits (47), Expect = 2.9
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -2
Query: 143 LYFPDDQKYAIYIPLFLPIM 84
+Y PD + Y ++ LF PI+
Sbjct: 50 IYAPDAEAYTLFADLFDPII 69
>AF023619-1|AAC39040.1| 355|Apis mellifera arginine kinase protein.
Length = 355
Score = 23.0 bits (47), Expect = 2.9
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -2
Query: 143 LYFPDDQKYAIYIPLFLPIM 84
+Y PD + Y ++ LF PI+
Sbjct: 66 IYAPDAEAYTLFADLFDPII 85
>AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 22.2 bits (45), Expect = 5.0
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = +1
Query: 505 MICPTLGSNSRTCWEHCSAGGLAITTPPHLGDINACIDKGFLRPS-LSYIMMGALSQGTM 681
+ICP G WE C+ G PP + + G P+ L + G L+ T+
Sbjct: 610 LICPDGGRAEINEWERCNLG----LEPPRV-----ILSSGAKSPTVLEELTHGTLAASTL 660
Query: 682 XSAR 693
S R
Sbjct: 661 YSKR 664
>AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 22.2 bits (45), Expect = 5.0
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = +1
Query: 505 MICPTLGSNSRTCWEHCSAGGLAITTPPHLGDINACIDKGFLRPS-LSYIMMGALSQGTM 681
+ICP G WE C+ G PP + + G P+ L + G L+ T+
Sbjct: 610 LICPDGGRAEINEWERCNLG----LEPPRV-----ILSSGAKSPTVLEELTHGTLAASTL 660
Query: 682 XSAR 693
S R
Sbjct: 661 YSKR 664
>AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 22.2 bits (45), Expect = 5.0
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = +1
Query: 505 MICPTLGSNSRTCWEHCSAGGLAITTPPHLGDINACIDKGFLRPS-LSYIMMGALSQGTM 681
+ICP G WE C+ G PP + + G P+ L + G L+ T+
Sbjct: 610 LICPDGGRAEINEWERCNLG----LEPPRV-----ILSSGAKSPTVLEELTHGTLAASTL 660
Query: 682 XSAR 693
S R
Sbjct: 661 YSKR 664
>AF080430-1|AAC28863.2| 208|Apis mellifera ribosomal protein S8
protein.
Length = 208
Score = 22.2 bits (45), Expect = 5.0
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -1
Query: 42 SWGSRCTKKK 13
SWGS CT +K
Sbjct: 66 SWGSECTTRK 75
>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
protein.
Length = 1143
Score = 21.8 bits (44), Expect = 6.6
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +2
Query: 392 PPPSGAATPTSKALSVLLRLRP 457
PP SG+ATP L L+P
Sbjct: 392 PPISGSATPVFHQEMALYYLKP 413
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.8
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = -3
Query: 655 SLYTIMKVAKILCRYKHL 602
+L+T++ ILCR H+
Sbjct: 441 TLFTVLATIVILCRAPHI 458
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.8
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = -3
Query: 655 SLYTIMKVAKILCRYKHL 602
+L+T++ ILCR H+
Sbjct: 441 TLFTVLATIVILCRAPHI 458
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.8
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = -3
Query: 655 SLYTIMKVAKILCRYKHL 602
+L+T++ ILCR H+
Sbjct: 441 TLFTVLATIVILCRAPHI 458
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.8
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = -3
Query: 655 SLYTIMKVAKILCRYKHL 602
+L+T++ ILCR H+
Sbjct: 441 TLFTVLATIVILCRAPHI 458
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.8
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = -3
Query: 655 SLYTIMKVAKILCRYKHL 602
+L+T++ ILCR H+
Sbjct: 441 TLFTVLATIVILCRAPHI 458
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.8
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = -3
Query: 655 SLYTIMKVAKILCRYKHL 602
+L+T++ ILCR H+
Sbjct: 441 TLFTVLATIVILCRAPHI 458
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 8.8
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = -3
Query: 655 SLYTIMKVAKILCRYKHL 602
+L+T++ ILCR H+
Sbjct: 509 TLFTVLATIVILCRAPHI 526
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 8.8
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = -3
Query: 655 SLYTIMKVAKILCRYKHL 602
+L+T++ ILCR H+
Sbjct: 509 TLFTVLATIVILCRAPHI 526
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,428
Number of Sequences: 438
Number of extensions: 3722
Number of successful extensions: 18
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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