Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15k18
         (306 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X55077-1|CAA38905.1|  591|Homo sapiens alpha-2 macroglobulin rec...    28   4.6  
X13916-1|CAA32112.1| 4544|Homo sapiens LDL-receptor related prec...    28   4.6  
U07807-1|AAA20232.1|   62|Homo sapiens metallothionein IV protein.     28   4.6  
DQ314873-1|ABC40732.1| 4544|Homo sapiens low density lipoprotein...    28   4.6  
BC113444-1|AAI13445.1|   62|Homo sapiens metallothionein 4 protein.    28   4.6  
BC113442-1|AAI13443.1|   62|Homo sapiens metallothionein 4 protein.    28   4.6  
AF058427-1|AAC64265.1| 4544|Homo sapiens lipoprotein receptor-re...    28   4.6  
AB209498-1|BAD92735.1| 2359|Homo sapiens low density lipoprotein...    28   4.6  

>X55077-1|CAA38905.1|  591|Homo sapiens alpha-2 macroglobulin
           receptor protein.
          Length = 591

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -1

Query: 261 CLPSNDLITRFE-CLPNFPTGIFRCTTGETLGSGADKGCC 145
           CLPS    T    C+P    GIFRC   +  G G D+  C
Sbjct: 139 CLPSQFKCTNTNRCIP----GIFRCNGQDNCGDGEDERDC 174


>X13916-1|CAA32112.1| 4544|Homo sapiens LDL-receptor related precursor
            (AA -19 to 4525) protein.
          Length = 4544

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -1

Query: 261  CLPSNDLITRFE-CLPNFPTGIFRCTTGETLGSGADKGCC 145
            CLPS    T    C+P    GIFRC   +  G G D+  C
Sbjct: 3413 CLPSQFKCTNTNRCIP----GIFRCNGQDNCGDGEDERDC 3448


>U07807-1|AAA20232.1|   62|Homo sapiens metallothionein IV protein.
          Length = 62

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/43 (34%), Positives = 17/43 (39%)
 Frame = -1

Query: 261 CLPSNDLITRFECLPNFPTGIFRCTTGETLGSGADKGCCYQCP 133
           C   N    R  C P  P G  +C  G     G+DK  C  CP
Sbjct: 22  CTTCNCKTCRKSCCPCCPPGCAKCARGCICKGGSDKCSC--CP 62


>DQ314873-1|ABC40732.1| 4544|Homo sapiens low density
            lipoprotein-related protein 1 (alpha-2-macroglobulin
            receptor) protein.
          Length = 4544

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -1

Query: 261  CLPSNDLITRFE-CLPNFPTGIFRCTTGETLGSGADKGCC 145
            CLPS    T    C+P    GIFRC   +  G G D+  C
Sbjct: 3413 CLPSQFKCTNTNRCIP----GIFRCNGQDNCGDGEDERDC 3448


>BC113444-1|AAI13445.1|   62|Homo sapiens metallothionein 4 protein.
          Length = 62

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/43 (34%), Positives = 17/43 (39%)
 Frame = -1

Query: 261 CLPSNDLITRFECLPNFPTGIFRCTTGETLGSGADKGCCYQCP 133
           C   N    R  C P  P G  +C  G     G+DK  C  CP
Sbjct: 22  CTTCNCKTCRKSCCPCCPPGCAKCARGCICKGGSDKCSC--CP 62


>BC113442-1|AAI13443.1|   62|Homo sapiens metallothionein 4 protein.
          Length = 62

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/43 (34%), Positives = 17/43 (39%)
 Frame = -1

Query: 261 CLPSNDLITRFECLPNFPTGIFRCTTGETLGSGADKGCCYQCP 133
           C   N    R  C P  P G  +C  G     G+DK  C  CP
Sbjct: 22  CTTCNCKTCRKSCCPCCPPGCAKCARGCICKGGSDKCSC--CP 62


>AF058427-1|AAC64265.1| 4544|Homo sapiens lipoprotein receptor-related
            protein protein.
          Length = 4544

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -1

Query: 261  CLPSNDLITRFE-CLPNFPTGIFRCTTGETLGSGADKGCC 145
            CLPS    T    C+P    GIFRC   +  G G D+  C
Sbjct: 3413 CLPSQFKCTNTNRCIP----GIFRCNGQDNCGDGEDERDC 3448


>AB209498-1|BAD92735.1| 2359|Homo sapiens low density
            lipoprotein-related protein 1 variant protein.
          Length = 2359

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -1

Query: 261  CLPSNDLITRFE-CLPNFPTGIFRCTTGETLGSGADKGCC 145
            CLPS    T    C+P    GIFRC   +  G G D+  C
Sbjct: 1229 CLPSQFKCTNTNRCIP----GIFRCNGQDNCGDGEDERDC 1264


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,659,091
Number of Sequences: 237096
Number of extensions: 824852
Number of successful extensions: 1641
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1641
length of database: 76,859,062
effective HSP length: 78
effective length of database: 58,365,574
effective search space used: 1342408202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)