Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15k16
         (336 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL513205-6|CAH73791.1|  319|Homo sapiens olfactory receptor, fam...    31   0.67 
AB065650-1|BAC05876.1|  319|Homo sapiens seven transmembrane hel...    31   0.67 
AL832004-1|CAD89903.1|  452|Homo sapiens hypothetical protein pr...    29   4.7  
AY028900-1|AAK30025.1| 1543|Homo sapiens ATP-binding cassette A1...    28   6.2  
AB065524-1|BAC05772.1|  216|Homo sapiens seven transmembrane hel...    28   8.2  
AB065441-1|BAC05708.1|  309|Homo sapiens seven transmembrane hel...    28   8.2  

>AL513205-6|CAH73791.1|  319|Homo sapiens olfactory receptor, family
           6, subfamily K, member18491) protein.
          Length = 319

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +2

Query: 176 G*ILYIYVLCLYGLIFSFRFIEFEITTILYKFHFNIYFLLTKFSFLRL 319
           G + +I +L +YG I +   I F +  +    H  +YF ++  SFL +
Sbjct: 28  GLLFFIPLLLIYGFILTGNLIMFIVIQVGMALHTPLYFFISVLSFLEI 75


>AB065650-1|BAC05876.1|  319|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 319

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +2

Query: 176 G*ILYIYVLCLYGLIFSFRFIEFEITTILYKFHFNIYFLLTKFSFLRL 319
           G + +I +L +YG I +   I F +  +    H  +YF ++  SFL +
Sbjct: 28  GLLFFIPLLLIYGFILTGNLIMFIVIQVGMALHTPLYFFISVLSFLEI 75


>AL832004-1|CAD89903.1|  452|Homo sapiens hypothetical protein
           protein.
          Length = 452

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +3

Query: 189 TFMCCVF-MDLFFHFVSSSLKSQRFYTSFTSIYTFYS 296
           T++C +F M +F   V +S+ S  F+T F  I+T YS
Sbjct: 183 TYICSIFIMSIFMALVITSI-SIVFHTGFMVIFTLYS 218


>AY028900-1|AAK30025.1| 1543|Homo sapiens ATP-binding cassette A10
           protein.
          Length = 1543

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +3

Query: 189 TFMCCVF-MDLFFHFVSSSLKSQRFYTSFTSIYTFYS 296
           T++C +F M +F   V +S+ S  F+T F  I+T YS
Sbjct: 183 TYICFIFIMSIFMALVITSI-SIVFHTGFMVIFTLYS 218


>AB065524-1|BAC05772.1|  216|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 216

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 5/31 (16%)
 Frame = +1

Query: 154 CSISFCRRLN-PI----HLCVVSLWTYFFIS 231
           C ++ CR L+ P+    HLCV  L  YFF+S
Sbjct: 89  CFVAICRPLHYPVIVNPHLCVFFLLVYFFLS 119


>AB065441-1|BAC05708.1|  309|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 309

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 19/59 (32%), Positives = 27/59 (45%)
 Frame = +2

Query: 143 SKKCALSHSVAG*ILYIYVLCLYGLIFSFRFIEFEITTILYKFHFNIYFLLTKFSFLRL 319
           +K   + HS+    L IY+  L G +         ITT+ +  H  +YF L   SFL L
Sbjct: 18  NKNMCILHSIL--FLLIYLCALMGNVLIIM-----ITTLDHHLHTPVYFFLKNLSFLDL 69


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,074,967
Number of Sequences: 237096
Number of extensions: 810438
Number of successful extensions: 5367
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5367
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1794632842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)