Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15k13
(738 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ525179-1|ABF56619.1| 244|Homo sapiens Lcrp369 protein. 155 1e-37
BC001722-1|AAH01722.1| 244|Homo sapiens chromosome 14 open read... 155 1e-37
AF151857-1|AAD34094.1| 244|Homo sapiens CGI-99 protein protein. 155 1e-37
AF100755-1|AAD43019.1| 244|Homo sapiens homeobox prox 1 protein. 155 1e-37
AF087877-1|AAP97177.1| 244|Homo sapiens CLE7 protein. 155 1e-37
AY817175-1|AAV54070.1| 244|Homo sapiens CLE protein. 153 8e-37
U26555-1|AAA67565.1| 1642|Homo sapiens versican V2 core protein ... 30 7.5
U16306-1|AAA65018.1| 3396|Homo sapiens chondroitin sulfate prote... 30 7.5
AB209491-1|BAD92728.1| 3410|Homo sapiens chondroitin sulfate pro... 30 7.5
>DQ525179-1|ABF56619.1| 244|Homo sapiens Lcrp369 protein.
Length = 244
Score = 155 bits (377), Expect = 1e-37
Identities = 89/227 (39%), Positives = 126/227 (55%), Gaps = 22/227 (9%)
Frame = -3
Query: 736 NCEDEKEYRSVVLWLEDQKIRHYKIEDREGLRNIDSDFWKEAYNTYQKDLVSPAAEGTLN 557
NC+DE E+R+ ++WLEDQKIRHYKIEDR LRNI S W + + Y +D+ P
Sbjct: 18 NCKDETEFRNFIVWLEDQKIRHYKIEDRGNLRNIHSSDWPKFFEKYLRDVNCPFKIQDRQ 77
Query: 556 EQLNWLLSYAVRLEYADNVDXXXXXXXXXXXXXXXVV-SSNPLDNLDFSSQAFKAGVNRV 380
E ++WLL AVRLEY DN + ++ PL NLD ++ FKAGV +
Sbjct: 78 EAIDWLLGLAVRLEYGDNAEKYKDLVPDNSKTADNATKNAEPLINLDVNNPDFKAGVMAL 137
Query: 379 CTVASIGPHPDPKIRLAALA----------KVLKTSPHPEPLQTEVN-----------LV 263
+ I H D + L A+ V K + E L ++ ++
Sbjct: 138 ANLLQIQRHDDYLVMLKAIRILVQERLTQDAVAKANQTKEGLPVALDKHILGFDTGDAVL 197
Query: 262 NQPSDVLKLLFVQDLRNLQTKINEALVAVQTVTADPRTDTKLGRVGR 122
N+ + +L+LL +++LR LQTKINEA+VAVQ + ADP+TD +LG+VGR
Sbjct: 198 NEAAQILRLLHIEELRELQTKINEAIVAVQAIIADPKTDHRLGKVGR 244
>BC001722-1|AAH01722.1| 244|Homo sapiens chromosome 14 open reading
frame 166 protein.
Length = 244
Score = 155 bits (377), Expect = 1e-37
Identities = 89/227 (39%), Positives = 126/227 (55%), Gaps = 22/227 (9%)
Frame = -3
Query: 736 NCEDEKEYRSVVLWLEDQKIRHYKIEDREGLRNIDSDFWKEAYNTYQKDLVSPAAEGTLN 557
NC+DE E+R+ ++WLEDQKIRHYKIEDR LRNI S W + + Y +D+ P
Sbjct: 18 NCKDETEFRNFIVWLEDQKIRHYKIEDRGNLRNIHSSDWPKFFEKYLRDVNCPFKIQDRQ 77
Query: 556 EQLNWLLSYAVRLEYADNVDXXXXXXXXXXXXXXXVV-SSNPLDNLDFSSQAFKAGVNRV 380
E ++WLL AVRLEY DN + ++ PL NLD ++ FKAGV +
Sbjct: 78 EAIDWLLGLAVRLEYGDNAEKYKDLVPDNSKTADNATKNAEPLINLDVNNPDFKAGVMAL 137
Query: 379 CTVASIGPHPDPKIRLAALA----------KVLKTSPHPEPLQTEVN-----------LV 263
+ I H D + L A+ V K + E L ++ ++
Sbjct: 138 ANLLQIQRHDDYLVMLKAIRILVQERLTQDAVAKANQTKEGLPVALDKHILGFDTGDAVL 197
Query: 262 NQPSDVLKLLFVQDLRNLQTKINEALVAVQTVTADPRTDTKLGRVGR 122
N+ + +L+LL +++LR LQTKINEA+VAVQ + ADP+TD +LG+VGR
Sbjct: 198 NEAAQILRLLHIEELRELQTKINEAIVAVQAIIADPKTDHRLGKVGR 244
>AF151857-1|AAD34094.1| 244|Homo sapiens CGI-99 protein protein.
Length = 244
Score = 155 bits (377), Expect = 1e-37
Identities = 89/227 (39%), Positives = 126/227 (55%), Gaps = 22/227 (9%)
Frame = -3
Query: 736 NCEDEKEYRSVVLWLEDQKIRHYKIEDREGLRNIDSDFWKEAYNTYQKDLVSPAAEGTLN 557
NC+DE E+R+ ++WLEDQKIRHYKIEDR LRNI S W + + Y +D+ P
Sbjct: 18 NCKDETEFRNFIVWLEDQKIRHYKIEDRGNLRNIHSSDWPKFFEKYLRDVNCPFKIQDRQ 77
Query: 556 EQLNWLLSYAVRLEYADNVDXXXXXXXXXXXXXXXVV-SSNPLDNLDFSSQAFKAGVNRV 380
E ++WLL AVRLEY DN + ++ PL NLD ++ FKAGV +
Sbjct: 78 EAIDWLLGLAVRLEYGDNAEKYKDLVPDNSKTADNATKNAEPLINLDVNNPDFKAGVMAL 137
Query: 379 CTVASIGPHPDPKIRLAALA----------KVLKTSPHPEPLQTEVN-----------LV 263
+ I H D + L A+ V K + E L ++ ++
Sbjct: 138 ANLLQIQRHDDYLVMLKAIRILVQERLTQDAVAKANQTKEGLPVALDKHILGFDTGDAVL 197
Query: 262 NQPSDVLKLLFVQDLRNLQTKINEALVAVQTVTADPRTDTKLGRVGR 122
N+ + +L+LL +++LR LQTKINEA+VAVQ + ADP+TD +LG+VGR
Sbjct: 198 NEAAQILRLLHIEELRELQTKINEAIVAVQAIIADPKTDHRLGKVGR 244
>AF100755-1|AAD43019.1| 244|Homo sapiens homeobox prox 1 protein.
Length = 244
Score = 155 bits (377), Expect = 1e-37
Identities = 89/227 (39%), Positives = 126/227 (55%), Gaps = 22/227 (9%)
Frame = -3
Query: 736 NCEDEKEYRSVVLWLEDQKIRHYKIEDREGLRNIDSDFWKEAYNTYQKDLVSPAAEGTLN 557
NC+DE E+R+ ++WLEDQKIRHYKIEDR LRNI S W + + Y +D+ P
Sbjct: 18 NCKDETEFRNFIVWLEDQKIRHYKIEDRGNLRNIHSSDWPKFFEKYLRDVNCPFKIQDRQ 77
Query: 556 EQLNWLLSYAVRLEYADNVDXXXXXXXXXXXXXXXVV-SSNPLDNLDFSSQAFKAGVNRV 380
E ++WLL AVRLEY DN + ++ PL NLD ++ FKAGV +
Sbjct: 78 EAIDWLLGLAVRLEYGDNAEKYKDLVPDNSKTADNATKNAEPLINLDVNNPDFKAGVMAL 137
Query: 379 CTVASIGPHPDPKIRLAALA----------KVLKTSPHPEPLQTEVN-----------LV 263
+ I H D + L A+ V K + E L ++ ++
Sbjct: 138 ANLLQIQRHDDYLVMLKAIRILVQERLTQDAVAKANQTKEGLPVALDKHILGFDTGDAVL 197
Query: 262 NQPSDVLKLLFVQDLRNLQTKINEALVAVQTVTADPRTDTKLGRVGR 122
N+ + +L+LL +++LR LQTKINEA+VAVQ + ADP+TD +LG+VGR
Sbjct: 198 NEAAQILRLLHIEELRELQTKINEAIVAVQAIIADPKTDHRLGKVGR 244
>AF087877-1|AAP97177.1| 244|Homo sapiens CLE7 protein.
Length = 244
Score = 155 bits (377), Expect = 1e-37
Identities = 89/227 (39%), Positives = 126/227 (55%), Gaps = 22/227 (9%)
Frame = -3
Query: 736 NCEDEKEYRSVVLWLEDQKIRHYKIEDREGLRNIDSDFWKEAYNTYQKDLVSPAAEGTLN 557
NC+DE E+R+ ++WLEDQKIRHYKIEDR LRNI S W + + Y +D+ P
Sbjct: 18 NCKDETEFRNFIVWLEDQKIRHYKIEDRGNLRNIHSSDWPKFFEKYLRDVNCPFKIQDRQ 77
Query: 556 EQLNWLLSYAVRLEYADNVDXXXXXXXXXXXXXXXVV-SSNPLDNLDFSSQAFKAGVNRV 380
E ++WLL AVRLEY DN + ++ PL NLD ++ FKAGV +
Sbjct: 78 EAIDWLLGLAVRLEYGDNAEKYKDLVPDNSKTADNATKNAEPLINLDVNNPDFKAGVMAL 137
Query: 379 CTVASIGPHPDPKIRLAALA----------KVLKTSPHPEPLQTEVN-----------LV 263
+ I H D + L A+ V K + E L ++ ++
Sbjct: 138 ANLLQIQRHDDYLVMLKAIRILVQERLTQDAVAKANQTKEGLPVALDKHILGFDTGDAVL 197
Query: 262 NQPSDVLKLLFVQDLRNLQTKINEALVAVQTVTADPRTDTKLGRVGR 122
N+ + +L+LL +++LR LQTKINEA+VAVQ + ADP+TD +LG+VGR
Sbjct: 198 NEAAQILRLLHIEELRELQTKINEAIVAVQAIIADPKTDHRLGKVGR 244
>AY817175-1|AAV54070.1| 244|Homo sapiens CLE protein.
Length = 244
Score = 153 bits (370), Expect = 8e-37
Identities = 88/227 (38%), Positives = 125/227 (55%), Gaps = 22/227 (9%)
Frame = -3
Query: 736 NCEDEKEYRSVVLWLEDQKIRHYKIEDREGLRNIDSDFWKEAYNTYQKDLVSPAAEGTLN 557
NC+DE E+R+ ++WLEDQKI HYKIEDR LRNI S W + + Y +D+ P
Sbjct: 18 NCKDETEFRNFIVWLEDQKIGHYKIEDRGNLRNIHSSDWPKFFEKYLRDVNCPFKIQDRQ 77
Query: 556 EQLNWLLSYAVRLEYADNVDXXXXXXXXXXXXXXXVV-SSNPLDNLDFSSQAFKAGVNRV 380
E ++WLL AVRLEY DN + ++ PL NLD ++ FKAGV +
Sbjct: 78 EAIDWLLGLAVRLEYGDNAEKYKDLVPDNSKTADNATKNAEPLINLDVNNPDFKAGVMAL 137
Query: 379 CTVASIGPHPDPKIRLAALA----------KVLKTSPHPEPLQTEVN-----------LV 263
+ I H D + L A+ V K + E L ++ ++
Sbjct: 138 ANLLQIQRHDDYLVMLKAIRILVQERLTQDAVAKANQTKEGLPVALDKHILGFDTGDAVL 197
Query: 262 NQPSDVLKLLFVQDLRNLQTKINEALVAVQTVTADPRTDTKLGRVGR 122
N+ + +L+LL +++LR LQTKINEA+VAVQ + ADP+TD +LG+VGR
Sbjct: 198 NEAAQILRLLHIEELRELQTKINEAIVAVQAIIADPKTDHRLGKVGR 244
>U26555-1|AAA67565.1| 1642|Homo sapiens versican V2 core protein
precursor protein.
Length = 1642
Score = 30.3 bits (65), Expect = 7.5
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = -3
Query: 325 LAKVLKTSPHPEPLQTEVNLVNQPSDVLKLLFVQDL--RNLQTKINEALVAVQTVTADPR 152
L K L T+P P +TE+ L D + + + + +LQT++ +T+ + R
Sbjct: 636 LGKYLSTTPFPSQHRTEIELFPYSGDKILVEGISTVIYPSLQTEMTHRRERTETLIPEMR 695
Query: 151 TDT 143
TDT
Sbjct: 696 TDT 698
>U16306-1|AAA65018.1| 3396|Homo sapiens chondroitin sulfate
proteoglycan versican V0 splice-variant precursor
peptide protein.
Length = 3396
Score = 30.3 bits (65), Expect = 7.5
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = -3
Query: 325 LAKVLKTSPHPEPLQTEVNLVNQPSDVLKLLFVQDL--RNLQTKINEALVAVQTVTADPR 152
L K L T+P P +TE+ L D + + + + +LQT++ +T+ + R
Sbjct: 636 LGKYLSTTPFPSQHRTEIELFPYSGDKILVEGISTVIYPSLQTEMTHRRERTETLIPEMR 695
Query: 151 TDT 143
TDT
Sbjct: 696 TDT 698
>AB209491-1|BAD92728.1| 3410|Homo sapiens chondroitin sulfate
proteoglycan 2 (versican) variant protein.
Length = 3410
Score = 30.3 bits (65), Expect = 7.5
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = -3
Query: 325 LAKVLKTSPHPEPLQTEVNLVNQPSDVLKLLFVQDL--RNLQTKINEALVAVQTVTADPR 152
L K L T+P P +TE+ L D + + + + +LQT++ +T+ + R
Sbjct: 650 LGKYLSTTPFPSQHRTEIELFPYSGDKILVEGISTVIYPSLQTEMTHRRERTETLIPEMR 709
Query: 151 TDT 143
TDT
Sbjct: 710 TDT 712
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,812,069
Number of Sequences: 237096
Number of extensions: 1592176
Number of successful extensions: 3039
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3033
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8791154398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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