Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15k08
         (832 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    28   1.9  
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    27   2.5  
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    27   3.3  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    26   7.5  
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy...    25   10.0 

>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 702 FSNKISISTLYFRNNLSISGGKLGTHA 782
           F+NKI   T Y++++LS SG  L  HA
Sbjct: 222 FTNKILTKTYYYKDDLSPSGEFLYDHA 248


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -1

Query: 814 WKRFCFRKAVLACVPSFPPEMDKLFLKYSVEMDILFENFKAIL 686
           W R  F+K     V    P + +L L Y +E+   F N  ++L
Sbjct: 113 WVRTYFQKDFSQTVDDLKPLLSELGLNYEIELPNSFSNLTSLL 155


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 103 ELDKVKKTLRYKTDVHYENIYKR*N*LNLEQRNKVKDN 216
           ++ K  K   +KTDVH E++ K     NLE RN   +N
Sbjct: 109 KISKSSKQDEHKTDVHKESVSKLSK--NLESRNNRDEN 144


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 580 CTFDDLTLKFVIEKCVHF*NN-ILNELSSV 666
           C+ DD  + F    C+HF N+  L E+S+V
Sbjct: 560 CSLDDSIIGFGYGSCMHFINSETLEEISTV 589


>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 21  MERVVLVQATKKKPERKEWHHYVA 92
           +ER   V+A  K PE+K+W ++V+
Sbjct: 171 IERFGRVRAITKTPEKKQWINHVS 194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,186,178
Number of Sequences: 5004
Number of extensions: 64079
Number of successful extensions: 158
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)