Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15k07
         (794 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    28   1.3  
SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces p...    27   2.3  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    27   4.1  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    26   5.4  
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy...    25   9.4  
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    25   9.4  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    25   9.4  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    25   9.4  

>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +2

Query: 209 PKNEYSRR*KRYKKVLKFYIISSYPDFIMDEMKHEIFGPPV 331
           PK  Y+ R K+ + +L+   ++S  D +++   HE  G P+
Sbjct: 73  PKENYNARKKKEQGILQMERLNSSYDLLIEPQSHETPGKPL 113


>SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 264

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -3

Query: 75  NSVYSNNIPILFCIVDSIITV 13
           N VYSN +P+LF  V SI  V
Sbjct: 98  NKVYSNEVPLLFVFVISISIV 118


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 67  YTILPLMVCVFCCVYFIQGSLLWHGSRLYSM 159
           Y+I+  ++ VF  +YFI G L++    +Y M
Sbjct: 648 YSIISPLILVFGLIYFIIGFLVYKYELIYQM 678


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 263 YIISSYPDFIMDEMKHEIFGPPVTVS 340
           Y+ISSYP + M+++     G PV VS
Sbjct: 488 YLISSYPQYTMEDLNRS-NGLPVIVS 512


>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 692 FYSEFKNVLQVSFPETDGFSFQDIVF 615
           F +  K  L  +FP +D    +DI+F
Sbjct: 72  FQNNLKKQLSAAFPSSDTMQLEDIIF 97


>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 667 KTFLNSL*KSSIALHNLSVTAVYVDARIYRIAPLC 771
           KT+ NSL  S+I +    +  V V+ RI R   LC
Sbjct: 407 KTYRNSLIVSAIGVPGSLIAGVLVEFRIGRKGTLC 441


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1323

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 67   YTILPLMVCVFCCV 108
            Y+++P M C FCC+
Sbjct: 1257 YSLVPRMSCTFCCL 1270


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -2

Query: 535 LIYHVKIFYINYEQIIAICFYFGILMSFDFMYIYSYVSTV 416
           ++  ++IF IN++ I  I FY G    FD   I + +S +
Sbjct: 251 ILCFMQIFCINWDGIARIQFYLG---KFDISLIMALISAI 287


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,186,102
Number of Sequences: 5004
Number of extensions: 64352
Number of successful extensions: 165
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)