Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15k06
         (375 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...    72   3e-14
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    29   0.24 
SPCC5E4.10c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   0.96 
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   1.7  
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    25   2.9  
SPCC1620.03 |mug163||sequence orphan|Schizosaccharomyces pombe|c...    25   5.1  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      24   9.0  
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    24   9.0  

>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 72.1 bits (169), Expect = 3e-14
 Identities = 37/74 (50%), Positives = 48/74 (64%)
 Frame = -1

Query: 366 AKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDCDGMVAMMEYRDFDGTQIP 187
           A+L+E  P++V VF+ N    +K IL  FK+  F+ GESMD D MV +M YR+ DG   P
Sbjct: 97  ARLQESNPERVPVFEKNAIGFVKKILANFKDYDFYIGESMDPDAMVVLMNYRE-DGI-TP 154

Query: 186 IMMFFKHGLEEEKF 145
            M+FFK GL  EKF
Sbjct: 155 YMIFFKDGLVSEKF 168


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 29.1 bits (62), Expect = 0.24
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +2

Query: 104 ASLELLSYFLSNI*NFSSSRPCLKNIMIGICVPSKSLY 217
           AS ELL+       NFS+ R CL+N ++  CVP   +Y
Sbjct: 781 ASFELLNNLTEARKNFSNYRDCLENCVLP-CVPFLGVY 817


>SPCC5E4.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 101

 Score = 27.1 bits (57), Expect = 0.96
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 187 WYLRTIKVSIFHHGNHAITIHRLPSKELKFL 279
           WY++T K+SI    N+  + +R P  +  FL
Sbjct: 12  WYMKTDKISIDETSNNMSSKYRAPQDDPMFL 42


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = +3

Query: 189 VFAYHQSLYIPSWQPC-HHN 245
           V A+ Q L++P W PC  HN
Sbjct: 336 VVAFTQGLFLPRWLPCIKHN 355


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 265 ELKFLKPAEDVFHYFVHVCFKYFNLVR 345
           +  FLKP   ++ YF+ +  +Y +L+R
Sbjct: 175 QFDFLKPNNALYPYFMRIVQQYTSLIR 201


>SPCC1620.03 |mug163||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 186

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +2

Query: 272 SSLNLPRMSFITLFMFVLNTS 334
           +SLN PR+  +T++ F+  T+
Sbjct: 77  NSLNFPRIEGLTIYKFIFKTA 97


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 117 NSKLAP*YFCFFIYLSIMS 61
           +S + P +FCFF Y S+ S
Sbjct: 101 DSNVVP-FFCFFFYFSLFS 118


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 12/54 (22%), Positives = 25/54 (46%)
 Frame = -1

Query: 372 LVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDCDGMVAMMEYR 211
           ++ K   KAP +   F++  N   K  +  FK+  +      D D +V + +++
Sbjct: 587 IIGKWYYKAPKEFATFESAKNLNGKSFVDNFKDRYYM--YKQDIDNVVGLKDFK 638


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,518,382
Number of Sequences: 5004
Number of extensions: 28428
Number of successful extensions: 74
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)