Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15k05
         (829 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    23   2.6  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   4.6  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   4.6  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    22   6.0  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   8.0  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   8.0  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   8.0  

>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 62  NEFYYSNINFRLNSFKSYVNGF*TIYYNIIELLYNL 169
           N + YSN N   N++ +Y N       N  +L YN+
Sbjct: 320 NNYKYSNYNNYNNNYNNYNNYNNNYNNNYKKLYYNI 355


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -2

Query: 462 HNQHDYYFNASLN*N*IKHRQNRKLKWK-YMLKI 364
           HN ++Y +N +   N   +  N+KL +K Y++ I
Sbjct: 91  HNNNNYKYNYNNKYNYNNNNYNKKLYYKNYIINI 124


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +2

Query: 467 RAYLNNRRTPN 499
           RAY++NRR PN
Sbjct: 509 RAYVDNRRRPN 519


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 101 SFKSYVNGF*TIYYNIIEL 157
           ++ +Y N +  +YYNII +
Sbjct: 323 NYNNYNNNYKPLYYNIINI 341


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +2

Query: 14  KSTTFISQKARH*KGINEFYYSNINFRLNSFKSYVN 121
           K  + +S K  H     ++ Y+N N+  N  K Y N
Sbjct: 80  KIISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLYYN 115


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +2

Query: 14  KSTTFISQKARH*KGINEFYYSNINFRLNSFKSYVN 121
           K  + +S K  H     ++ Y+N N+  N  K Y N
Sbjct: 80  KIISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLYYN 115


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +2

Query: 14  KSTTFISQKARH*KGINEFYYSNINFRLNSFKSYVN 121
           K  + +S K  H     ++ Y+N N+  N  K Y N
Sbjct: 80  KIISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLYYN 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,673
Number of Sequences: 438
Number of extensions: 4175
Number of successful extensions: 19
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)