Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15k04
         (874 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc...    31   0.28 
SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subuni...    30   0.49 
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    29   1.1  
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc...    28   2.0  
SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   6.1  
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    26   8.1  
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    26   8.1  

>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = -2

Query: 729 CQVT-SEDHEAAVDAIKRHFLSEHVLVISRNMNVNNDRALDEYLIGLLKQGNTLFAKDDN 553
           CQVT SE  +  V +I      E+++V ++     N  AL +YL  L K  N LF ++  
Sbjct: 66  CQVTASEPSQLNVQSI------ENMIVTTKAGQTEN--ALSKYLPYLSKNSNILFVQNGM 117

Query: 552 GSIAGVC 532
           G++  VC
Sbjct: 118 GAVENVC 124


>SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 150

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -2

Query: 375 IKMLTVIPEYRRQGLAVMLAEKSKELAHDQG 283
           I ML ++ EYR QG+A  L + S ++  ++G
Sbjct: 72  IAMLAIVKEYRGQGIATKLTQASLDVMKNRG 102


>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 474 DKMRNVLNSSDLRDCLQNSRRPL-QSSHYHPL 566
           D + N + SSD R+      RP  QSSHYHP+
Sbjct: 139 DTVVNHMGSSDPRNIDYGIYRPFNQSSHYHPM 170


>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
           Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 554

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -2

Query: 321 LAEKSKELAHDQGYNIVRMDCINPYDYKIAERCMLQF 211
           L   + E AH   Y   +++C + Y+ K+ E C+  F
Sbjct: 175 LLRGNHECAHLTDYFTFKLECTHKYNIKVYEACLQSF 211


>SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
 Frame = -1

Query: 865 LVMFSLRTKCLRYLT----NKTYFLFTNKEMRIWNQRFDSPRETRKFF 734
           LV F L    + Y      +K  F      + +WN++F +PR+T  +F
Sbjct: 146 LVSFGLSAYVISYYVEKYVDKAKFPIIKGFIEMWNRKFFNPRKTHVYF 193


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +3

Query: 171 RWLHVICEG 197
           RWLH++CEG
Sbjct: 593 RWLHIVCEG 601


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +1

Query: 235 YFVIVWVDAIHSNYIVSL 288
           YF+  W+D +H  Y+++L
Sbjct: 396 YFLDGWIDGVHLTYLITL 413


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,674,582
Number of Sequences: 5004
Number of extensions: 80323
Number of successful extensions: 249
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)