Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15k03
         (594 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    29   0.51 
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces...    26   3.6  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    26   4.8  
SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces pomb...    25   8.3  
SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|ch...    25   8.3  

>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 29.1 bits (62), Expect = 0.51
 Identities = 20/69 (28%), Positives = 31/69 (44%)
 Frame = -1

Query: 405 VTPDPGSLPLLSQTPSLVVKCDQEGDNTCKILCNALATVTKAKGPEILCSRLKDVNELKL 226
           V PD  SL L +    L+   D+E DN  K++     +   A+   IL   + DV     
Sbjct: 267 VFPDAESLKLAASR--LLALADREADNNAKLIMLDRISQLAARDKSILEDLITDVIPFLS 324

Query: 225 SAFYXTCDK 199
           S+ +  C+K
Sbjct: 325 SSDFDVCEK 333


>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 735

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +1

Query: 382 QTSRIWRHSRKSSARAVAFPVFEWG--DTNWYNFS*YKIINPDQHENA 519
           +TS IW   R++ AR  A   + W   D+ WY+++  K+     +E+A
Sbjct: 505 ETSAIW--DRRARARRAAMEKYLWSEADSMWYDYN-TKLETKSTYESA 549


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +2

Query: 458  ILTGTTSASTK*LIPTNMRMQMSQKYTLKEPILCSFSMLNE 580
            +L  T + +   LI + M +  S+KYT   P++ +++ L+E
Sbjct: 1180 VLILTKNITLAKLITSRMSVDFSEKYTQLIPVITTYTHLSE 1220


>SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 281

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 546 SLRVYFCDICILMLVGINYFVLAEVV 469
           SL  +FC +C++  +G  +  LAE +
Sbjct: 89  SLITFFCKLCVIFGLGFVFTYLAEQI 114


>SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 395 SGVTVGNPPQEQLPFRSSNGAILTGTTSASTK 490
           +G T  +PP   + F   +G I+TG    S K
Sbjct: 199 AGATFIDPPNPNVNFTQIDGKIVTGVNPQSAK 230


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,231,176
Number of Sequences: 5004
Number of extensions: 42584
Number of successful extensions: 123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)