Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15k02
(803 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe... 29 1.0
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 27 2.4
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 27 4.1
SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces pombe... 27 4.1
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo... 27 4.1
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo... 26 5.5
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c... 26 5.5
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 26 7.2
SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.5
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 25 9.5
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1... 25 9.5
>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 652
Score = 28.7 bits (61), Expect = 1.0
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = -3
Query: 792 EPSTAESGAQLTALIDKYNKLNNKLNEVEQDLEIGRERMRRQQDRLQTAREVVRQNAN 619
+P + + + + K NK+ LNE+E ++E E +Q+ +Q V Q+A+
Sbjct: 34 KPEKKDDKEKSSKKVQKKNKVIESLNEMEVEMEDENENENDEQEAIQYYINVESQDAD 91
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 27.5 bits (58), Expect = 2.4
Identities = 19/77 (24%), Positives = 32/77 (41%)
Frame = -3
Query: 780 AESGAQLTALIDKYNKLNNKLNEVEQDLEIGRERMRRQQDRLQTAREVVRQNANRARKLI 601
AE + TAL D YN+ E + L R R Q+ + Q + R+N + ++ I
Sbjct: 209 AERDDEKTALDDLYNQRRALQREYDTQLRAFRTYEREQRAKRQEQFRLERENREKEKRRI 268
Query: 600 DNETDWRVFQMSVWTRE 550
+ + +T E
Sbjct: 269 AAQRKLEEASIPAFTEE 285
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -3
Query: 288 RRLSAFRTSLAPRLREPALVDEIP 217
RRLS F SLA + EP VD +P
Sbjct: 881 RRLSFFAQSLATPIPEPVPVDNMP 904
>SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 229
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/30 (33%), Positives = 22/30 (73%)
Frame = -3
Query: 684 ERMRRQQDRLQTAREVVRQNANRARKLIDN 595
++M+R Q+R ++++++ N +ARK ID+
Sbjct: 115 DQMKRIQERDESSKKLRESNIEKARKAIDD 144
>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
Tip1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/46 (23%), Positives = 25/46 (54%)
Frame = -3
Query: 765 QLTALIDKYNKLNNKLNEVEQDLEIGRERMRRQQDRLQTAREVVRQ 628
++ A +D+ L N+ + +++ RER+ +++R+Q R Q
Sbjct: 158 EVLATVDQLQSLVTNFNDQQDEVDELRERITLKEERIQQMRNEASQ 203
>SPBC651.09c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 560
Score = 26.2 bits (55), Expect = 5.5
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +2
Query: 278 ERRRVYPLATLTPLREDSEELDSTEPSISRRDSLATDVGS 397
ERRR+ AT TP+ + L T P S SL+T + S
Sbjct: 446 ERRRLSAAATATPMSAPTSVLTGTSPQPS--PSLSTSIMS 483
>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = -3
Query: 762 LTALIDKYNKLNNKLNEVEQDLEIGRERMRRQQDRLQT 649
+T L D Y++LN +E + + ++ E M + D L++
Sbjct: 286 ITKLKDTYDRLNIHYDEYDGESQVSLELMNKMVDELRS 323
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -3
Query: 288 RRLSAFRTSLAPRLREPALVDEIP 217
RRLS F SLA + EP VD +P
Sbjct: 853 RRLSFFAQSLATPIPEPIPVDAMP 876
>SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 455
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 771 GAQLTALIDKYNKLNNKLNEVEQD 700
G +LT L+DK K+ + N+V +D
Sbjct: 248 GGELTVLLDKEAKVRPRTNDVYED 271
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -3
Query: 759 TALIDKYNKLNNKLNEVEQDLEIGRERMRRQQDR 658
TAL +K +KLN +L +VE L R + ++ R
Sbjct: 225 TALKEKIDKLNKELEKVEPQLTFLRSKNSIEKPR 258
>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
Phf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 461
Score = 25.4 bits (53), Expect = 9.5
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +1
Query: 151 CNRVFHSQCHHP 186
CN +H CHHP
Sbjct: 213 CNSPYHQLCHHP 224
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,447,361
Number of Sequences: 5004
Number of extensions: 41138
Number of successful extensions: 172
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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