Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15k02
(803 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016452-17|AAB66021.1| 1152|Caenorhabditis elegans Hypothetical... 36 0.026
AF125459-6|AAN60503.1| 219|Caenorhabditis elegans Hypothetical ... 35 0.059
AF125459-5|AAD12844.1| 345|Caenorhabditis elegans Hypothetical ... 35 0.059
Z95310-3|CAB08562.3| 1026|Caenorhabditis elegans Hypothetical pr... 33 0.32
Z92790-6|CAH60783.2| 1026|Caenorhabditis elegans Hypothetical pr... 33 0.32
Z70750-13|CAA94745.2| 679|Caenorhabditis elegans Hypothetical p... 33 0.32
AF239998-1|AAF63494.1| 679|Caenorhabditis elegans MDF-1 protein. 33 0.32
AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric ... 31 0.73
AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric ... 31 0.73
AF099918-2|AAN63400.1| 219|Caenorhabditis elegans Hypothetical ... 30 1.7
AF099918-1|AAK29840.2| 820|Caenorhabditis elegans Hypothetical ... 30 1.7
Z81034-4|CAB02729.1| 541|Caenorhabditis elegans Hypothetical pr... 29 3.9
D38541-1|BAA07544.1| 284|Caenorhabditis elegans CeTMII protein. 29 3.9
D38540-1|BAA07543.1| 284|Caenorhabditis elegans CeTMI protein. 29 3.9
D38539-2|BAA07541.1| 284|Caenorhabditis elegans CeTMII protein. 29 3.9
D38539-1|BAA07540.1| 284|Caenorhabditis elegans CeTMI protein. 29 3.9
AL132877-4|CAC70112.1| 284|Caenorhabditis elegans Hypothetical ... 29 3.9
AL132877-3|CAC70115.1| 256|Caenorhabditis elegans Hypothetical ... 29 3.9
AL132877-2|CAC70113.2| 193|Caenorhabditis elegans Hypothetical ... 29 3.9
AL132877-1|CAC70114.1| 284|Caenorhabditis elegans Hypothetical ... 29 3.9
AF298180-1|AAG10302.1| 256|Caenorhabditis elegans tropomyosin i... 29 3.9
Z81540-9|CAD89742.1| 740|Caenorhabditis elegans Hypothetical pr... 29 5.1
Z75550-15|CAA99931.2| 2003|Caenorhabditis elegans Hypothetical p... 29 5.1
Z75538-4|CAA99841.2| 2003|Caenorhabditis elegans Hypothetical pr... 29 5.1
Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical pr... 29 5.1
Z48241-4|CAA88284.1| 468|Caenorhabditis elegans Hypothetical pr... 29 5.1
Z48241-3|CAC42265.1| 490|Caenorhabditis elegans Hypothetical pr... 29 5.1
U49263-1|AAC47238.1| 2003|Caenorhabditis elegans non-muscle myos... 29 5.1
D38542-1|BAA07545.1| 256|Caenorhabditis elegans CeTMIII protein. 29 5.1
D38539-3|BAA07542.1| 256|Caenorhabditis elegans CeTMIII protein. 29 5.1
AL132877-5|CAD45604.1| 256|Caenorhabditis elegans Hypothetical ... 29 5.1
AF241847-1|AAF71523.1| 468|Caenorhabditis elegans LAG-3B protein. 29 5.1
AF241846-1|AAF71522.1| 490|Caenorhabditis elegans LAG-3A protein. 29 5.1
AC006733-1|AAF60487.1| 610|Caenorhabditis elegans Hypothetical ... 29 5.1
U80032-2|AAM15555.1| 643|Caenorhabditis elegans Osmotic stress ... 28 6.8
AY360470-1|AAR12229.1| 643|Caenorhabditis elegans osmotic stres... 28 6.8
Z92777-6|CAE17682.1| 353|Caenorhabditis elegans Hypothetical pr... 28 9.0
Z46996-1|CAA87099.1| 472|Caenorhabditis elegans Hypothetical pr... 28 9.0
U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myos... 28 9.0
>AF016452-17|AAB66021.1| 1152|Caenorhabditis elegans Hypothetical
protein T05H4.3 protein.
Length = 1152
Score = 36.3 bits (80), Expect = 0.026
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = -3
Query: 747 DKYNKLNNKLNEVEQDLEIGRERMRRQQDRLQTAREVVRQNANRARKLID 598
+ YN+ KLN++ L++ ER RR ++ +T+ E V ++ RK+ D
Sbjct: 532 ESYNEQLKKLNDMNIKLDVKEERHRRNEEPAETSIEAVSNQQSKIRKVSD 581
>AF125459-6|AAN60503.1| 219|Caenorhabditis elegans Hypothetical
protein Y25C1A.8b protein.
Length = 219
Score = 35.1 bits (77), Expect = 0.059
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -2
Query: 703 RFRDRQRAHAPPAGPSADRPRGRQTEREPRAETDRQRDGLAR 578
R R R+R +PP G ++DR R + RE R RD R
Sbjct: 178 RSRSRERRRSPPRGTTSDRRRDDERRREKERRRSRSRDRFRR 219
>AF125459-5|AAD12844.1| 345|Caenorhabditis elegans Hypothetical
protein Y25C1A.8a protein.
Length = 345
Score = 35.1 bits (77), Expect = 0.059
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -2
Query: 703 RFRDRQRAHAPPAGPSADRPRGRQTEREPRAETDRQRDGLAR 578
R R R+R +PP G ++DR R + RE R RD R
Sbjct: 304 RSRSRERRRSPPRGTTSDRRRDDERRREKERRRSRSRDRFRR 345
>Z95310-3|CAB08562.3| 1026|Caenorhabditis elegans Hypothetical protein
H40L08.3 protein.
Length = 1026
Score = 32.7 bits (71), Expect = 0.32
Identities = 16/64 (25%), Positives = 36/64 (56%)
Frame = -3
Query: 795 LEPSTAESGAQLTALIDKYNKLNNKLNEVEQDLEIGRERMRRQQDRLQTAREVVRQNANR 616
L+ + + Q + D+ K+N+ L +Q +E RE +RQ+ +Q+ +E+V++ N+
Sbjct: 887 LKATCVQLNEQRDHIGDENAKVNSMLRIAKQQIEHTREENQRQEAEIQSLKELVQKLRNK 946
Query: 615 ARKL 604
++
Sbjct: 947 ENEI 950
>Z92790-6|CAH60783.2| 1026|Caenorhabditis elegans Hypothetical protein
H40L08.3 protein.
Length = 1026
Score = 32.7 bits (71), Expect = 0.32
Identities = 16/64 (25%), Positives = 36/64 (56%)
Frame = -3
Query: 795 LEPSTAESGAQLTALIDKYNKLNNKLNEVEQDLEIGRERMRRQQDRLQTAREVVRQNANR 616
L+ + + Q + D+ K+N+ L +Q +E RE +RQ+ +Q+ +E+V++ N+
Sbjct: 887 LKATCVQLNEQRDHIGDENAKVNSMLRIAKQQIEHTREENQRQEAEIQSLKELVQKLRNK 946
Query: 615 ARKL 604
++
Sbjct: 947 ENEI 950
>Z70750-13|CAA94745.2| 679|Caenorhabditis elegans Hypothetical
protein C50F4.11 protein.
Length = 679
Score = 32.7 bits (71), Expect = 0.32
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = -3
Query: 789 PSTAESGAQLTALIDKYNKLNNKLNEVEQDLEIGRERMRR 670
PS++++ A+ LID+ +L K N++E+D E RM +
Sbjct: 367 PSSSDNSAKQLQLIDRITQLITKNNQLEKDFEAATSRMTK 406
>AF239998-1|AAF63494.1| 679|Caenorhabditis elegans MDF-1 protein.
Length = 679
Score = 32.7 bits (71), Expect = 0.32
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = -3
Query: 789 PSTAESGAQLTALIDKYNKLNNKLNEVEQDLEIGRERMRR 670
PS++++ A+ LID+ +L K N++E+D E RM +
Sbjct: 367 PSSSDNSAKQLQLIDRITQLITKNNQLEKDFEAATSRMTK 406
>AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 6, isoform a protein.
Length = 1724
Score = 31.5 bits (68), Expect = 0.73
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = -3
Query: 777 ESGAQLTALIDKYNKLNNKLNEVEQDLEIGRERMRRQQDRLQTAREVVRQNANRARKLID 598
E I K K+ NK E E ++ +RR + T VV++N+NR RK +D
Sbjct: 1576 EESVDADGKIWKKPKIVNKSPEKEVNIS-ANVTLRRSRRGQSTEPPVVKENSNRKRKSVD 1634
Query: 597 NETD 586
E +
Sbjct: 1635 EEEE 1638
>AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 6, isoform b protein.
Length = 1758
Score = 31.5 bits (68), Expect = 0.73
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = -3
Query: 777 ESGAQLTALIDKYNKLNNKLNEVEQDLEIGRERMRRQQDRLQTAREVVRQNANRARKLID 598
E I K K+ NK E E ++ +RR + T VV++N+NR RK +D
Sbjct: 1576 EESVDADGKIWKKPKIVNKSPEKEVNIS-ANVTLRRSRRGQSTEPPVVKENSNRKRKSVD 1634
Query: 597 NETD 586
E +
Sbjct: 1635 EEEE 1638
>AF099918-2|AAN63400.1| 219|Caenorhabditis elegans Hypothetical
protein H05C05.1b protein.
Length = 219
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Frame = +1
Query: 181 HPQGHR--GTSCLFRYFVDQRGLAQPGRQTRPEGGEAPRVPAGHTHAAARGLRGAGQHR 351
H + HR S RY +R G ++ GG + +ARG+RG G HR
Sbjct: 109 HQKNHRKYDQSSSQRYQQQRRSSMSAGSESGGRGGGGGGQKPSSSRGSARGMRGGGGHR 167
>AF099918-1|AAK29840.2| 820|Caenorhabditis elegans Hypothetical
protein H05C05.1a protein.
Length = 820
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Frame = +1
Query: 181 HPQGHR--GTSCLFRYFVDQRGLAQPGRQTRPEGGEAPRVPAGHTHAAARGLRGAGQHR 351
H + HR S RY +R G ++ GG + +ARG+RG G HR
Sbjct: 613 HQKNHRKYDQSSSQRYQQQRRSSMSAGSESGGRGGGGGGQKPSSSRGSARGMRGGGGHR 671
>Z81034-4|CAB02729.1| 541|Caenorhabditis elegans Hypothetical
protein C15C6.3 protein.
Length = 541
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 697 RDRQRAHAPPAGPSADRPRGRQTEREPRAET 605
R RQR+ PP PSA R + Q ++ R +T
Sbjct: 368 RSRQRSETPPMVPSAKRRKDDQKQKLRRGDT 398
>D38541-1|BAA07544.1| 284|Caenorhabditis elegans CeTMII protein.
Length = 284
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -3
Query: 744 KYNKLNNKLNEVEQDLEIGRERMRRQQDRLQTAREVVRQNANRARKL 604
KY+++ KL VE DLE ER ++++ E +R N + L
Sbjct: 161 KYDEVARKLAMVEADLERAEERAEAGENKIVELEEELRVVGNNLKSL 207
>D38540-1|BAA07543.1| 284|Caenorhabditis elegans CeTMI protein.
Length = 284
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -3
Query: 744 KYNKLNNKLNEVEQDLEIGRERMRRQQDRLQTAREVVRQNANRARKL 604
KY+++ KL VE DLE ER ++++ E +R N + L
Sbjct: 161 KYDEVARKLAMVEADLERAEERAEAGENKIVELEEELRVVGNNLKSL 207
>D38539-2|BAA07541.1| 284|Caenorhabditis elegans CeTMII protein.
Length = 284
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -3
Query: 744 KYNKLNNKLNEVEQDLEIGRERMRRQQDRLQTAREVVRQNANRARKL 604
KY+++ KL VE DLE ER ++++ E +R N + L
Sbjct: 161 KYDEVARKLAMVEADLERAEERAEAGENKIVELEEELRVVGNNLKSL 207
>D38539-1|BAA07540.1| 284|Caenorhabditis elegans CeTMI protein.
Length = 284
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -3
Query: 744 KYNKLNNKLNEVEQDLEIGRERMRRQQDRLQTAREVVRQNANRARKL 604
KY+++ KL VE DLE ER ++++ E +R N + L
Sbjct: 161 KYDEVARKLAMVEADLERAEERAEAGENKIVELEEELRVVGNNLKSL 207
>AL132877-4|CAC70112.1| 284|Caenorhabditis elegans Hypothetical
protein Y105E8B.1d protein.
Length = 284
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -3
Query: 744 KYNKLNNKLNEVEQDLEIGRERMRRQQDRLQTAREVVRQNANRARKL 604
KY+++ KL VE DLE ER ++++ E +R N + L
Sbjct: 161 KYDEVARKLAMVEADLERAEERAEAGENKIVELEEELRVVGNNLKSL 207
>AL132877-3|CAC70115.1| 256|Caenorhabditis elegans Hypothetical
protein Y105E8B.1c protein.
Length = 256
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = -3
Query: 801 ADLEPSTAESGAQLTALIDKYNKLNNKLNEVEQDLEIGRERMRRQQDRLQTAREVVRQNA 622
+DLE E + L +K ++ KL VE DLE ER ++++ E +R
Sbjct: 114 SDLERKLRECQSILHETENKAEEVARKLAMVEADLERAEERAEAGENKIVELEEELRVVG 173
Query: 621 NRARKL 604
N + L
Sbjct: 174 NNLKSL 179
>AL132877-2|CAC70113.2| 193|Caenorhabditis elegans Hypothetical
protein Y105E8B.1b protein.
Length = 193
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -3
Query: 744 KYNKLNNKLNEVEQDLEIGRERMRRQQDRLQTAREVVRQNANRARKL 604
KY+++ KL VE DLE ER ++++ E +R N + L
Sbjct: 70 KYDEVARKLAMVEADLERAEERAEAGENKIVELEEELRVVGNNLKSL 116
>AL132877-1|CAC70114.1| 284|Caenorhabditis elegans Hypothetical
protein Y105E8B.1a protein.
Length = 284
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -3
Query: 744 KYNKLNNKLNEVEQDLEIGRERMRRQQDRLQTAREVVRQNANRARKL 604
KY+++ KL VE DLE ER ++++ E +R N + L
Sbjct: 161 KYDEVARKLAMVEADLERAEERAEAGENKIVELEEELRVVGNNLKSL 207
>AF298180-1|AAG10302.1| 256|Caenorhabditis elegans tropomyosin
isoform IV protein.
Length = 256
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = -3
Query: 801 ADLEPSTAESGAQLTALIDKYNKLNNKLNEVEQDLEIGRERMRRQQDRLQTAREVVRQNA 622
+DLE E + L +K ++ KL VE DLE ER ++++ E +R
Sbjct: 114 SDLERKLRECQSILHETENKAEEVARKLAMVEADLERAEERAEAGENKIVELEEELRVVG 173
Query: 621 NRARKL 604
N + L
Sbjct: 174 NNLKSL 179
>Z81540-9|CAD89742.1| 740|Caenorhabditis elegans Hypothetical
protein F46B3.17 protein.
Length = 740
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = -2
Query: 688 QRAHAPPAGPSADRPRGRQTEREPRAETDRQRD 590
Q APP+GPS P R+ RE A TD D
Sbjct: 113 QSGGAPPSGPSLFSPELRKLAREVPAPTDDYDD 145
>Z75550-15|CAA99931.2| 2003|Caenorhabditis elegans Hypothetical
protein F20G4.3 protein.
Length = 2003
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = -3
Query: 732 LNNKLNEVEQDLEI---GRERMRRQQDRLQTAREVVRQNANRARKLIDNE 592
LNNK+ ++E+DL + R+ Q++++ + V+ ARK +D E
Sbjct: 1344 LNNKIRQLEEDLAVAVEARDDALDAQEKIEKEVKEVKSLLAEARKKLDEE 1393
>Z75538-4|CAA99841.2| 2003|Caenorhabditis elegans Hypothetical protein
F20G4.3 protein.
Length = 2003
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = -3
Query: 732 LNNKLNEVEQDLEI---GRERMRRQQDRLQTAREVVRQNANRARKLIDNE 592
LNNK+ ++E+DL + R+ Q++++ + V+ ARK +D E
Sbjct: 1344 LNNKIRQLEEDLAVAVEARDDALDAQEKIEKEVKEVKSLLAEARKKLDEE 1393
>Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical protein
T28C6.9 protein.
Length = 1861
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/74 (24%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Frame = -3
Query: 798 DLEPSTAESGAQLTALIDKYNKLNNKLNEVE-QDLEIGRERMRRQQDRLQTAREVVRQ-N 625
+L+ E+ +++ L++ LNN++ +E Q+LE+ ER++ ++ L + ++ +
Sbjct: 1229 ELDKELQEAKSEIGRLVEIEKVLNNRILSLEDQNLEL-EERLQEMEEELLDEKNKKKEVD 1287
Query: 624 ANRARKLIDNETDW 583
A +K +N DW
Sbjct: 1288 AKVEQKSEENWGDW 1301
>Z48241-4|CAA88284.1| 468|Caenorhabditis elegans Hypothetical
protein C32A3.1b protein.
Length = 468
Score = 28.7 bits (61), Expect = 5.1
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = -3
Query: 798 DLEPSTAESGAQLTALIDKYNKLNNKLNEV-EQDLEIGRERMRRQQDRLQTAREVVRQNA 622
D PSTA AQ I + + NK+ + +Q E+ R +R+Q +Q ++ +Q
Sbjct: 301 DRMPSTAPPPAQNPQHIAQLQQQQNKMRLMQQQQQEMQRIEQQRRQQIMQQQQQQQQQEH 360
Query: 621 NRARKLIDNETDWRVFQ 571
R + L+ + + Q
Sbjct: 361 QRQQMLLQQQQQQQQMQ 377
>Z48241-3|CAC42265.1| 490|Caenorhabditis elegans Hypothetical
protein C32A3.1a protein.
Length = 490
Score = 28.7 bits (61), Expect = 5.1
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = -3
Query: 798 DLEPSTAESGAQLTALIDKYNKLNNKLNEV-EQDLEIGRERMRRQQDRLQTAREVVRQNA 622
D PSTA AQ I + + NK+ + +Q E+ R +R+Q +Q ++ +Q
Sbjct: 323 DRMPSTAPPPAQNPQHIAQLQQQQNKMRLMQQQQQEMQRIEQQRRQQIMQQQQQQQQQEH 382
Query: 621 NRARKLIDNETDWRVFQ 571
R + L+ + + Q
Sbjct: 383 QRQQMLLQQQQQQQQMQ 399
>U49263-1|AAC47238.1| 2003|Caenorhabditis elegans non-muscle myosin
heavy chain II protein.
Length = 2003
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = -3
Query: 732 LNNKLNEVEQDLEI---GRERMRRQQDRLQTAREVVRQNANRARKLIDNE 592
LNNK+ ++E+DL + R+ Q++++ + V+ ARK +D E
Sbjct: 1344 LNNKIRQLEEDLAVAVEARDDALDAQEKIEKEVKEVKSLLAEARKKLDEE 1393
>D38542-1|BAA07545.1| 256|Caenorhabditis elegans CeTMIII protein.
Length = 256
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -3
Query: 744 KYNKLNNKLNEVEQDLEIGRERMRRQQDRLQTAREVVRQNANRARKL 604
KY ++ KL VE DLE ER ++++ E +R N + L
Sbjct: 133 KYEEVARKLAMVEADLERAEERAEAGENKIVELEEELRVVGNNLKSL 179
>D38539-3|BAA07542.1| 256|Caenorhabditis elegans CeTMIII protein.
Length = 256
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -3
Query: 744 KYNKLNNKLNEVEQDLEIGRERMRRQQDRLQTAREVVRQNANRARKL 604
KY ++ KL VE DLE ER ++++ E +R N + L
Sbjct: 133 KYEEVARKLAMVEADLERAEERAEAGENKIVELEEELRVVGNNLKSL 179
>AL132877-5|CAD45604.1| 256|Caenorhabditis elegans Hypothetical
protein Y105E8B.1e protein.
Length = 256
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -3
Query: 744 KYNKLNNKLNEVEQDLEIGRERMRRQQDRLQTAREVVRQNANRARKL 604
KY ++ KL VE DLE ER ++++ E +R N + L
Sbjct: 133 KYEEVARKLAMVEADLERAEERAEAGENKIVELEEELRVVGNNLKSL 179
>AF241847-1|AAF71523.1| 468|Caenorhabditis elegans LAG-3B protein.
Length = 468
Score = 28.7 bits (61), Expect = 5.1
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = -3
Query: 798 DLEPSTAESGAQLTALIDKYNKLNNKLNEV-EQDLEIGRERMRRQQDRLQTAREVVRQNA 622
D PSTA AQ I + + NK+ + +Q E+ R +R+Q +Q ++ +Q
Sbjct: 301 DRMPSTAPPPAQNPQHIAQLQQQQNKMRLMQQQQQEMQRIEQQRRQQIMQQQQQQQQQEH 360
Query: 621 NRARKLIDNETDWRVFQ 571
R + L+ + + Q
Sbjct: 361 QRQQMLLQQQQQQQQMQ 377
>AF241846-1|AAF71522.1| 490|Caenorhabditis elegans LAG-3A protein.
Length = 490
Score = 28.7 bits (61), Expect = 5.1
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = -3
Query: 798 DLEPSTAESGAQLTALIDKYNKLNNKLNEV-EQDLEIGRERMRRQQDRLQTAREVVRQNA 622
D PSTA AQ I + + NK+ + +Q E+ R +R+Q +Q ++ +Q
Sbjct: 323 DRMPSTAPPPAQNPQHIAQLQQQQNKMRLMQQQQQEMQRIEQQRRQQIMQQQQQQQQQEH 382
Query: 621 NRARKLIDNETDWRVFQ 571
R + L+ + + Q
Sbjct: 383 QRQQMLLQQQQQQQQMQ 399
>AC006733-1|AAF60487.1| 610|Caenorhabditis elegans Hypothetical
protein Y32H12A.2 protein.
Length = 610
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 311 TPLREDSEELDSTEPSISRRDSLATDVGSDMI 406
T L D ++DS E + D +AT++GSD I
Sbjct: 29 TQLLTDMPKMDSPEKLFNLEDKIATEMGSDRI 60
>U80032-2|AAM15555.1| 643|Caenorhabditis elegans Osmotic stress
resistant protein 1 protein.
Length = 643
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 652 DRPRGRQTEREPRAETDRQRDGLAR 578
D PR R ++ EP++E + QR LAR
Sbjct: 260 DVPRRRSSDGEPQSEAEHQRRDLAR 284
>AY360470-1|AAR12229.1| 643|Caenorhabditis elegans osmotic stress
resistance protein protein.
Length = 643
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 652 DRPRGRQTEREPRAETDRQRDGLAR 578
D PR R ++ EP++E + QR LAR
Sbjct: 260 DVPRRRSSDGEPQSEAEHQRRDLAR 284
>Z92777-6|CAE17682.1| 353|Caenorhabditis elegans Hypothetical
protein C17H1.9 protein.
Length = 353
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/50 (24%), Positives = 29/50 (58%)
Frame = -3
Query: 768 AQLTALIDKYNKLNNKLNEVEQDLEIGRERMRRQQDRLQTAREVVRQNAN 619
A+++ ++DK + L NK++ + + E+ R ++ QQD + + + N +
Sbjct: 306 ARISTIMDKIDSLTNKMDAISE--EVQRNTIQWQQDGNSSMKALTHTNGS 353
>Z46996-1|CAA87099.1| 472|Caenorhabditis elegans Hypothetical
protein C34C12.1 protein.
Length = 472
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Frame = -3
Query: 777 ESGAQLTALIDKYNKLNNKLNEVEQDLEIGRER--MRRQQDRLQTAR-EVVRQ 628
E +L L DKY + +L ++Q ++ RE+ + + RL+TA+ E+ RQ
Sbjct: 57 EHSEKLGKLNDKYKAVQEELKTMKQSSQLKREKGVLETENRRLETAKSELDRQ 109
>U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myosin
protein 1 protein.
Length = 1963
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/57 (19%), Positives = 26/57 (45%)
Frame = -3
Query: 798 DLEPSTAESGAQLTALIDKYNKLNNKLNEVEQDLEIGRERMRRQQDRLQTAREVVRQ 628
DLE + + K+ N++ E+EQ LE+ +L+ ++++++
Sbjct: 1597 DLENELENEKRGKSGAVSHRKKIENQIGELEQQLEVANRLKEEYNKQLKKNQQIIKE 1653
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,264,621
Number of Sequences: 27780
Number of extensions: 263284
Number of successful extensions: 1317
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 1132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1303
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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