Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15k02
         (803 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    25   0.62 
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    25   0.82 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    25   0.82 
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    24   1.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   5.8  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   7.7  

>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 25.4 bits (53), Expect = 0.62
 Identities = 11/49 (22%), Positives = 27/49 (55%)
 Frame = -3

Query: 747 DKYNKLNNKLNEVEQDLEIGRERMRRQQDRLQTAREVVRQNANRARKLI 601
           +K+ +L N+ NE++       ER++ +++     +E  R++    +K+I
Sbjct: 13  EKFKQLRNEDNEIDLRSRTKEERLQHRREAWLIQQEREREHQRLMKKMI 61


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 25.0 bits (52), Expect = 0.82
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 145 NRCNRVFHSQCHHPQGHRGTSCLFRYFVDQRGLA 246
           N+ NR F+S  + PQ       L+    D+ GLA
Sbjct: 16  NQLNRSFYSASYPPQNRSQEEDLWNLATDRAGLA 49


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 25.0 bits (52), Expect = 0.82
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 404 SYRNQRPSLKSHVWK 360
           SY  Q P+ K+HVWK
Sbjct: 414 SYDAQEPAWKTHVWK 428



 Score = 23.4 bits (48), Expect = 2.5
 Identities = 6/25 (24%), Positives = 15/25 (60%)
 Frame = +2

Query: 533 THVSVHSRVHTDIWKTRQSVSLSIS 607
           TH+ + +R  T +WK +  +  +++
Sbjct: 323 THMGLDTRTSTSLWKDKAMIEANVA 347


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -2

Query: 439 HARETPAGHRQNHIGTNVRR--*RVTSGNRRFCAVQLLGV 326
           HA +   GH+Q+H G ++      V SG ++   +Q LGV
Sbjct: 798 HAAQMIYGHQQSHHGLHINSSPSSVQSGQQQQSVLQGLGV 837


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/28 (28%), Positives = 19/28 (67%)
 Frame = +2

Query: 293 YPLATLTPLREDSEELDSTEPSISRRDS 376
           YP A++TP  ++  +  STE  ++++++
Sbjct: 438 YPNASVTPYNKNYTKFCSTEKRLTKQNT 465


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 10/49 (20%), Positives = 26/49 (53%)
 Frame = -3

Query: 747 DKYNKLNNKLNEVEQDLEIGRERMRRQQDRLQTAREVVRQNANRARKLI 601
           +K+ +L N+ N+++       ER++ +++     +E  ++     RK+I
Sbjct: 13  EKFKQLRNEDNKIDLRSRTKEERLQYRREAWLVQQEREQEYEKLKRKMI 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,893
Number of Sequences: 438
Number of extensions: 3441
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)