Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15j22
         (777 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC068989-1|AAH68989.1|  422|Homo sapiens chromosome 14 open read...    33   1.1  
AK058044-1|BAB71637.1|  422|Homo sapiens protein ( Homo sapiens ...    33   1.1  
AK124640-1|BAC85912.1|  711|Homo sapiens protein ( Homo sapiens ...    31   3.5  
AJ628447-1|CAF31653.1|  715|Homo sapiens Rap1 GTPase activating ...    31   3.5  
AJ628446-1|CAF31652.1|  730|Homo sapiens Rap1 GTPase activating ...    31   3.5  
AB028962-1|BAA82991.1|  444|Homo sapiens KIAA1039 protein protein.     31   3.5  
X90568-1|CAA62188.1|26926|Homo sapiens titin protein.                  31   6.1  
AJ277892-3|CAD12457.1| 5604|Homo sapiens Novex-3 Titin Isoform p...    31   6.1  
AJ277892-2|CAD12456.1|30017|Homo sapiens Titin protein.                31   6.1  
AJ277892-1|CAD12455.1|26926|Homo sapiens N2B-Titin Isoform protein.    31   6.1  
AC023270-1|AAX88844.1| 5604|Homo sapiens unknown protein.              31   6.1  
BC011524-1|AAH11524.1|  356|Homo sapiens family with sequence si...    30   8.1  
AK222731-1|BAD96451.1|  356|Homo sapiens hypothetical protein FL...    30   8.1  
AK001989-1|BAA92023.1|  356|Homo sapiens protein ( Homo sapiens ...    30   8.1  

>BC068989-1|AAH68989.1|  422|Homo sapiens chromosome 14 open reading
           frame 50 protein.
          Length = 422

 Score = 33.1 bits (72), Expect = 1.1
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 689 ITWIALGRKAFNQIEKEVHRIFKTPIFNFADHR 591
           + WI   R+   +IE+EV R+F+T +FN    R
Sbjct: 246 VAWIVFRRQHLTEIEEEVGRLFRTNMFNIPRRR 278


>AK058044-1|BAB71637.1|  422|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25315 fis, clone TST00114. ).
          Length = 422

 Score = 33.1 bits (72), Expect = 1.1
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 689 ITWIALGRKAFNQIEKEVHRIFKTPIFNFADHR 591
           + WI   R+   +IE+EV R+F+T +FN    R
Sbjct: 246 VAWIVFRRQHLTEIEEEVGRLFRTNMFNIPRRR 278


>AK124640-1|BAC85912.1|  711|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42649 fis, clone BRACE3027326, moderately
           similar to RAP1 GTPase activating protein 1. ).
          Length = 711

 Score = 31.5 bits (68), Expect = 3.5
 Identities = 21/65 (32%), Positives = 32/65 (49%)
 Frame = -2

Query: 299 LREIKVPLSGASTSSSRVRQSVGRLTSSRMSRSSAGGKQKSTTSATMQPLYKDIVIPEPS 120
           L+E    +S +S+S+S V  + G      M    +GG Q STTS   Q ++  +  P PS
Sbjct: 608 LKENGRAISRSSSSTSSVSSTAGE--GEAMEEGDSGGSQPSTTSPFKQEVF--VYSPSPS 663

Query: 119 NTDSS 105
           +   S
Sbjct: 664 SESPS 668


>AJ628447-1|CAF31653.1|  715|Homo sapiens Rap1 GTPase activating
           protein 2a protein.
          Length = 715

 Score = 31.5 bits (68), Expect = 3.5
 Identities = 21/65 (32%), Positives = 32/65 (49%)
 Frame = -2

Query: 299 LREIKVPLSGASTSSSRVRQSVGRLTSSRMSRSSAGGKQKSTTSATMQPLYKDIVIPEPS 120
           L+E    +S +S+S+S V  + G      M    +GG Q STTS   Q ++  +  P PS
Sbjct: 612 LKENGRAISRSSSSTSSVSSTAGE--GEAMEEGDSGGSQPSTTSPFKQEVF--VYSPSPS 667

Query: 119 NTDSS 105
           +   S
Sbjct: 668 SESPS 672


>AJ628446-1|CAF31652.1|  730|Homo sapiens Rap1 GTPase activating
           protein 2b protein.
          Length = 730

 Score = 31.5 bits (68), Expect = 3.5
 Identities = 21/65 (32%), Positives = 32/65 (49%)
 Frame = -2

Query: 299 LREIKVPLSGASTSSSRVRQSVGRLTSSRMSRSSAGGKQKSTTSATMQPLYKDIVIPEPS 120
           L+E    +S +S+S+S V  + G      M    +GG Q STTS   Q ++  +  P PS
Sbjct: 627 LKENGRAISRSSSSTSSVSSTAGE--GEAMEEGDSGGSQPSTTSPFKQEVF--VYSPSPS 682

Query: 119 NTDSS 105
           +   S
Sbjct: 683 SESPS 687


>AB028962-1|BAA82991.1|  444|Homo sapiens KIAA1039 protein protein.
          Length = 444

 Score = 31.5 bits (68), Expect = 3.5
 Identities = 21/65 (32%), Positives = 32/65 (49%)
 Frame = -2

Query: 299 LREIKVPLSGASTSSSRVRQSVGRLTSSRMSRSSAGGKQKSTTSATMQPLYKDIVIPEPS 120
           L+E    +S +S+S+S V  + G      M    +GG Q STTS   Q ++  +  P PS
Sbjct: 341 LKENGRAISRSSSSTSSVSSTAGE--GEAMEEGDSGGSQPSTTSPFKQEVF--VYSPSPS 396

Query: 119 NTDSS 105
           +   S
Sbjct: 397 SESPS 401


>X90568-1|CAA62188.1|26926|Homo sapiens titin protein.
          Length = 26926

 Score = 30.7 bits (66), Expect = 6.1
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
 Frame = -2

Query: 278  LSGASTSSSRVRQSVGRLTSSRMS-------RSSAGGKQKSTTSATMQPLYKDIVIPEP 123
            LS  S S S +R S  R++ +RMS       R S G + + T  + ++ LYK + + +P
Sbjct: 1359 LSPRSVSRSPIRMSPARMSPARMSPARMSPARMSPGRRLEETDESQLERLYKPVFVLKP 1417


>AJ277892-3|CAD12457.1| 5604|Homo sapiens Novex-3 Titin Isoform
            protein.
          Length = 5604

 Score = 30.7 bits (66), Expect = 6.1
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
 Frame = -2

Query: 278  LSGASTSSSRVRQSVGRLTSSRMS-------RSSAGGKQKSTTSATMQPLYKDIVIPEP 123
            LS  S S S +R S  R++ +RMS       R S G + + T  + ++ LYK + + +P
Sbjct: 1405 LSPRSVSRSPIRMSPARMSPARMSPARMSPARMSPGRRLEETDESQLERLYKPVFVLKP 1463


>AJ277892-2|CAD12456.1|30017|Homo sapiens Titin protein.
          Length = 30000

 Score = 30.7 bits (66), Expect = 6.1
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
 Frame = -2

Query: 278  LSGASTSSSRVRQSVGRLTSSRMS-------RSSAGGKQKSTTSATMQPLYKDIVIPEP 123
            LS  S S S +R S  R++ +RMS       R S G + + T  + ++ LYK + + +P
Sbjct: 1405 LSPRSVSRSPIRMSPARMSPARMSPARMSPARMSPGRRLEETDESQLERLYKPVFVLKP 1463


>AJ277892-1|CAD12455.1|26926|Homo sapiens N2B-Titin Isoform protein.
          Length = 26926

 Score = 30.7 bits (66), Expect = 6.1
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
 Frame = -2

Query: 278  LSGASTSSSRVRQSVGRLTSSRMS-------RSSAGGKQKSTTSATMQPLYKDIVIPEP 123
            LS  S S S +R S  R++ +RMS       R S G + + T  + ++ LYK + + +P
Sbjct: 1359 LSPRSVSRSPIRMSPARMSPARMSPARMSPARMSPGRRLEETDESQLERLYKPVFVLKP 1417


>AC023270-1|AAX88844.1| 5604|Homo sapiens unknown protein.
          Length = 5604

 Score = 30.7 bits (66), Expect = 6.1
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
 Frame = -2

Query: 278  LSGASTSSSRVRQSVGRLTSSRMS-------RSSAGGKQKSTTSATMQPLYKDIVIPEP 123
            LS  S S S +R S  R++ +RMS       R S G + + T  + ++ LYK + + +P
Sbjct: 1405 LSPRSVSRSPIRMSPARMSPARMSPARMSPARMSPGRRLEETDESQLERLYKPVFVLKP 1463


>BC011524-1|AAH11524.1|  356|Homo sapiens family with sequence
           similarity 105, member A protein.
          Length = 356

 Score = 30.3 bits (65), Expect = 8.1
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = -3

Query: 310 LTQCSGKSKSRYPERALHRVEFDNLWGG*HHQECPDRVREENRRVLRAQLCSRCIKTL*F 131
           L+ C+ + K   P   L R  ++ L+   HH +C  +VR +N   LR+ L     + + F
Sbjct: 97  LSYCAREWKGETPRNKLMRKAYEELFWR-HHIKCVRQVRRDNYDALRSVLFQIFSQGISF 155

Query: 130 PN 125
           P+
Sbjct: 156 PS 157


>AK222731-1|BAD96451.1|  356|Homo sapiens hypothetical protein
           FLJ11127 variant protein.
          Length = 356

 Score = 30.3 bits (65), Expect = 8.1
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = -3

Query: 310 LTQCSGKSKSRYPERALHRVEFDNLWGG*HHQECPDRVREENRRVLRAQLCSRCIKTL*F 131
           L+ C+ + K   P   L R  ++ L+   HH +C  +VR +N   LR+ L     + + F
Sbjct: 97  LSYCAREWKGETPRNKLMRKAYEELFWR-HHIKCVRQVRRDNYDALRSVLFQIFSQGISF 155

Query: 130 PN 125
           P+
Sbjct: 156 PS 157


>AK001989-1|BAA92023.1|  356|Homo sapiens protein ( Homo sapiens
           cDNA FLJ11127 fis, clone PLACE1006225. ).
          Length = 356

 Score = 30.3 bits (65), Expect = 8.1
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = -3

Query: 310 LTQCSGKSKSRYPERALHRVEFDNLWGG*HHQECPDRVREENRRVLRAQLCSRCIKTL*F 131
           L+ C+ + K   P   L R  ++ L+   HH +C  +VR +N   LR+ L     + + F
Sbjct: 97  LSYCAREWKGETPRNKLMRKAYEELFWR-HHIKCVRQVRRDNYDALRSVLFQIFSQGISF 155

Query: 130 PN 125
           P+
Sbjct: 156 PS 157


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,073,453
Number of Sequences: 237096
Number of extensions: 2364533
Number of successful extensions: 4894
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4894
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9423020542
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)