Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15j16
         (431 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   1.5  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   4.5  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   7.8  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +1

Query: 265 YVLVTSIFIVTQGSGYLVCVRNFHFYS 345
           Y+L T I +VT      VCV N HF S
Sbjct: 315 YLLFTMI-LVTLSIWITVCVLNVHFRS 340


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -2

Query: 259 SHAFQEAPAPPGVCY 215
           SH       PPGVCY
Sbjct: 358 SHPLHGNLLPPGVCY 372


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 12/51 (23%), Positives = 19/51 (37%)
 Frame = +1

Query: 193 HWLAMRCCNTRRAVQGLLEMHGSNYVLVTSIFIVTQGSGYLVCVRNFHFYS 345
           HW  MRC     A   ++      Y  + +I +   GS     +  + F S
Sbjct: 306 HWTVMRCVQAMIAGIVVISAGADAYPPLAAIVLGAIGSIVFYIISRYVFRS 356


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,656
Number of Sequences: 438
Number of extensions: 2313
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)