Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15j14
         (782 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   3.2  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   3.2  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.8  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 177 ASIIGIFNWQWLSPF 133
           A++I  F W W++PF
Sbjct: 171 AAVIIAFTWFWVTPF 185


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 177 ASIIGIFNWQWLSPF 133
           A++I  F W W++PF
Sbjct: 171 AAVIIAFTWFWVTPF 185


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +1

Query: 232 GAIRFSLVFFFNVACVFKPPKFFSKS 309
           G  + S+V   N +C++ PP  F  +
Sbjct: 85  GTYQTSVVVTHNGSCLYVPPGIFKST 110


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,739
Number of Sequences: 438
Number of extensions: 4390
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)