Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15j08
(833 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 31 0.15
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei... 29 0.81
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 29 0.81
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 29 1.1
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom... 28 1.4
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 28 1.9
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 3.3
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 27 4.3
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch... 27 4.3
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac... 27 4.3
SPBC21.07c |ppk24||serine/threonine protein kinase Ppk24|Schizos... 27 4.3
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces... 26 5.7
SPAC869.11 ||SPAC922.08c|amino acid permease, unknown 6|Schizosa... 26 5.7
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 26 5.7
SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomy... 26 5.7
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su... 26 5.7
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch... 26 7.6
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom... 26 7.6
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb... 26 7.6
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 26 7.6
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 26 7.6
>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 31.5 bits (68), Expect = 0.15
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = -1
Query: 269 TLELSFENRTDTSDVQESSNVEIE-TCGVEKIEKLTKYLQATGAGEREWKNFDGNVI 102
T++ + +T +SD+ E ++EI C E EKLT LQ+ +RE + N I
Sbjct: 138 TVDEDIDTQTMSSDMSEVQSMEISLNCDHEFFEKLTSELQSVEGLQREQRKILFNAI 194
>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 968
Score = 29.1 bits (62), Expect = 0.81
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 752 LQDYPPPDHFQTFHKSHWAQFVWTDGH 832
+ YP + F+ F KSHW F W + H
Sbjct: 854 MMKYPRSESFKMFKKSHWRYF-WINPH 879
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 29.1 bits (62), Expect = 0.81
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Frame = -1
Query: 704 CSRCLQMINENNKIEIDKQAFHSHCAKCYFCHTV--PSSN--IHICYGQVFCEPC 552
C +C + + +++ + +HS C KC C+ PSS Q+FC+ C
Sbjct: 24 CIKCWESVPSTSQVWFGGKCWHSDCFKCVNCNKKLDPSSEDFSQDDQKQIFCKLC 78
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 28.7 bits (61), Expect = 1.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 488 EQFADPRFAENMKQFMAGKDGAP 420
E DP F EN KQ++ K G+P
Sbjct: 266 EYLNDPDFEENRKQYLQNKSGSP 288
>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 28.3 bits (60), Expect = 1.4
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -1
Query: 566 FCEPCFQHHVLHRHKDNPN 510
FC PC + LH HKDNPN
Sbjct: 17 FCGPCRR---LHYHKDNPN 32
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 27.9 bits (59), Expect = 1.9
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -2
Query: 727 KGILNAASALDAFK*STRITKLKLTSRPSIVTVP-SAIFATRFHRPTSTSAMVKSSASLA 551
KG+ NAAS+ +F S I+K TSR S +P S + A + +KS
Sbjct: 621 KGVSNAASSKQSFPSSPSISKKLETSRLSTKKLPGSTMKAASALKEYPQQQSMKSGGEKQ 680
Query: 550 SNITSCT 530
N+ + T
Sbjct: 681 DNLVTIT 687
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.1 bits (57), Expect = 3.3
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = -2
Query: 682 STRITKLKLTSRPSIVTVP--SAIFATRFHRPTSTSAMVKSSASLASNITSCTDIRTTP 512
ST I ++ P TVP S + P STS+ SS+ L S TSCT + P
Sbjct: 288 STSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIP 346
Score = 27.1 bits (57), Expect = 3.3
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = -2
Query: 682 STRITKLKLTSRPSIVTVP--SAIFATRFHRPTSTSAMVKSSASLASNITSCTDIRTTP 512
ST I ++ P TVP S + P STS+ SS+ L S TSCT + P
Sbjct: 342 STSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIP 400
Score = 26.2 bits (55), Expect = 5.7
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = -2
Query: 595 PTSTSAMVKSSASLASNITSCTDIRTTPMXXXXXXXXXSRTPDLP 461
PTSTS+ +S L + TSCT + P TP +P
Sbjct: 152 PTSTSSTDTNSNPLPTTSTSCTTSTSIPPTGGSSSLSTPITPTVP 196
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 595 PTSTSAMVKSSASLASNITSCTDIRTTP 512
PTSTS+ +S+ L + TSCT + P
Sbjct: 209 PTSTSSTDTNSSPLPTTSTSCTTSTSIP 236
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 595 PTSTSAMVKSSASLASNITSCTDIRTTP 512
PTSTS+ +S+ L + TSCT + P
Sbjct: 265 PTSTSSTDTNSSPLPTTSTSCTTSTSIP 292
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 26.6 bits (56), Expect = 4.3
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = -1
Query: 764 DNPGASSKSEASEGNTKRSVCSRCLQMINENNKIEIDKQA 645
D+P +S E+ EG+ + S+ S +++++ E +KQA
Sbjct: 557 DSPNVASGVESDEGSEEISLDSEYSDILSDDGDFEKEKQA 596
>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 678
Score = 26.6 bits (56), Expect = 4.3
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +1
Query: 4 FNCKTHSQXCHKQLKQSDVFPFCKSIQPFKDSEMTFP 114
FN + + K F F +SIQ FKDSE P
Sbjct: 163 FNWPAINPNLKESSKFESFFGFVRSIQSFKDSETGLP 199
>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
Vps23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 487
Score = 26.6 bits (56), Expect = 4.3
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = -1
Query: 266 LELSFENRTDTSDVQESSNVEIETCGVEKIEKLTKYL 156
LEL F + + + ++ N+E++T KIE++ YL
Sbjct: 31 LELLFRKQCEDTFTLQAINIEVDTQDENKIEEVRIYL 67
>SPBC21.07c |ppk24||serine/threonine protein kinase
Ppk24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 461
Score = 26.6 bits (56), Expect = 4.3
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 238 SVRFSKDSSKVESSVLQSMVVVAVKMFNSYAHFFGSLLPNHSCGP 372
S+ SK ++K S V++ + A + N Y SLL HS P
Sbjct: 47 SINVSKSTTKKSSVVIKPSTITAPWLENEYLDSNTSLLSVHSIQP 91
>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 583
Score = 26.2 bits (55), Expect = 5.7
Identities = 9/33 (27%), Positives = 16/33 (48%)
Frame = +1
Query: 121 FFHSLSPAPVACKYFVSFSIFSTPHVSISTLLD 219
FF AP+ +F+ + I+ H+ + LD
Sbjct: 518 FFQGYLAAPIVIAFFIGYKIYDRSHIPSLSKLD 550
>SPAC869.11 ||SPAC922.08c|amino acid permease, unknown
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 26.2 bits (55), Expect = 5.7
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = +1
Query: 121 FFHSLSPAPVACKYFVSFSIFSTPHVSISTLLDSWT 228
FF APV +F+ + I+ H+ LD T
Sbjct: 514 FFQGYLAAPVTLAFFIGYKIYDRSHIPSLDKLDITT 549
>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1690
Score = 26.2 bits (55), Expect = 5.7
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Frame = -1
Query: 350 NSEPKKCA*EL--NIFTATTTIDCRTDDSTLELSFENRTDTS--------DVQESSNVEI 201
+SE ++ A L + F + + I ++ +E+ E+++DTS DVQ +
Sbjct: 1296 DSEKRRIALGLKSSYFDSDSDISMSDNEEDVEMRSEDQSDTSESEVGSKDDVQSEEVENL 1355
Query: 200 ETCGVEKIEKLTKYLQATGAGEREWKNFDGNVISESL 90
E+ G E E+ LQA G +W DG+ + + L
Sbjct: 1356 ESAGDEDEEEEPSALQANGF---DWT--DGSTVFDKL 1387
>SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 271
Score = 26.2 bits (55), Expect = 5.7
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +1
Query: 100 EMTFPSKFFHSLSPAPVACKYFVSFSIFSTPHVSISTLLDSW 225
E++ H+ SP P YF+S + VS+ LL W
Sbjct: 167 ELSPKEVILHTFSPPPKRANYFLSICFSVSVVVSLIGLLGVW 208
>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 26.2 bits (55), Expect = 5.7
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = -1
Query: 320 LNIFTATTTIDCRTDDSTLELSFENRTDTSDVQESSNVEIETCGVEKIEKLTKYLQATGA 141
L++ TAT+ + TD +++ EN SD+Q T +E+ L + G
Sbjct: 359 LDVTTATSLQNKSTDYGSVKRKTENLNSDSDIQNK-----RTKSIEENNSLPPIVSTNGI 413
Query: 140 --GEREWKNFDGNVISESLN 87
G+ E + NVI N
Sbjct: 414 TDGDTEMQESKKNVIINGFN 433
>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 563
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 147 GRLQVFRQFFNFFNSTRFNLYIARFLD 227
GRL+ R FFN S F+L + R LD
Sbjct: 321 GRLKPLRCFFNDDISYNFHLLLGRLLD 347
>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3
Query: 63 SLLQVNPAV*RFRNDIPVEILPF 131
S +QVNPA +R++ PVEI+ +
Sbjct: 268 SHMQVNPAFREYRSNRPVEIVQY 290
>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 933
Score = 25.8 bits (54), Expect = 7.6
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 102 NDIPVEILPFPFARAGRLQVFRQFFNFFN 188
ND+P+ ++ F R+G+L QF N ++
Sbjct: 388 NDVPLWVVLFYLMRSGQLDAALQFVNTYS 416
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 218 SSNVEIETCGVEKIEKLTKYLQATGAGEREWKNFDG 111
+S++EIET + K+ + A G E +NFDG
Sbjct: 236 ASSMEIETPDLLKLPHEDRTQSAYNQGSEETQNFDG 271
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1283
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 190 PHVSISTLLDSWTSDVSVRFSKDSSKVESSVLQSMV 297
PH +ISTL +D S SK +S ++ +++V
Sbjct: 183 PHSTISTLSTVSINDTSASLSKTTSPTAGTITETIV 218
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,615,188
Number of Sequences: 5004
Number of extensions: 79416
Number of successful extensions: 297
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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