Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15j06
         (797 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      24   1.4  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   2.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   3.3  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   5.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.7  

>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 316 FLLFVAILFSICEST*MWENKTKPLDVTSRDLGISSRYI 432
           F++ + I+ S CE+     N  +PL+  S DL    RYI
Sbjct: 19  FVVILLIIPSKCEAV---SNDMQPLEARSADLVPEPRYI 54


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -2

Query: 385 ALFYFPTFMYFHRY*TESRQTEETLNRQNHRY*TESRQTEETLNRQNKTNQ 233
           AL+ FP    F      SRQ  ET+ R+N RY    R  +E ++   +T +
Sbjct: 98  ALWNFPMISVF------SRQDIETIIRRNSRY--PLRPPQEVISHYRRTRR 140


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 755 KNVHVKLLKMISPY 796
           KN+HV  L+ + PY
Sbjct: 138 KNIHVSFLRTVPPY 151


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -2

Query: 337 ESRQTEETLNRQNHRY*TESRQTEETLNRQNKT 239
           ++++ E+T+NR+N  Y      + E  N +NK+
Sbjct: 161 QNKEEEQTINRKNSDYLDNQEVSME--NTENKS 191


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -3

Query: 780 FSNLTCTFLRYAITXKRII*YNYTMRLQFPKTHFFK 673
           F N  C F R A T K  + +N ++   F +    K
Sbjct: 534 FQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVK 569


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,350
Number of Sequences: 438
Number of extensions: 3554
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)