Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte15j05
(841 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex det... 25 1.1
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 24 1.5
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 24 1.5
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 24 1.5
AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex det... 24 2.0
AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex det... 24 2.0
DQ869053-1|ABJ09600.1| 459|Apis mellifera capa-like receptor pr... 23 2.7
AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex det... 23 2.7
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 23 2.7
DQ151547-1|ABA39280.1| 405|Apis mellifera tyramine receptor pro... 23 4.6
AY823258-1|AAX18443.1| 145|Apis mellifera pburs protein. 23 4.6
AM420632-1|CAM06632.1| 145|Apis mellifera bursicon subunit beta... 23 4.6
>AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 24.6 bits (51), Expect = 1.1
Identities = 30/130 (23%), Positives = 51/130 (39%)
Frame = -2
Query: 426 LNLYREGDGIVPRFLKAINRPHYFYTSMYNSLTADRDDFDGATSKGRGGSQEAKQSLAEY 247
+N E D ++ +K Y + NSL DF +S+ + ++ EY
Sbjct: 186 INKIEEHDTVLVVNIKKSGNESKKYATSSNSLRNRTHDFQHTSSRYSRERRCSRDRNREY 245
Query: 246 ASLYREYEHIEKCIKEGPYQPHLEQRKEELSKELASREEHIRKVVKEFKASGDSEQPLRA 67
R+YE L KE+L +E SR+ + R +E + S +E R
Sbjct: 246 RKKDRQYE-------------KLHNEKEKLLEERTSRKRYSRSRERE-QRSYKNENSYRK 291
Query: 66 SASTTEDGYR 37
T+++ R
Sbjct: 292 YRETSKERSR 301
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 24.2 bits (50), Expect = 1.5
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -2
Query: 573 HMGLGHVSTYGTRSATAQPSLDNREI 496
H G+ VS YGT P L +E+
Sbjct: 10 HFGVDDVSLYGTPKEEPGPGLPGQEV 35
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 24.2 bits (50), Expect = 1.5
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -2
Query: 573 HMGLGHVSTYGTRSATAQPSLDNREI 496
H G+ VS YGT P L +E+
Sbjct: 10 HFGVDDVSLYGTPKEEPGPGLPGQEV 35
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 24.2 bits (50), Expect = 1.5
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -2
Query: 573 HMGLGHVSTYGTRSATAQPSLDNREI 496
H G+ VS YGT P L +E+
Sbjct: 10 HFGVDDVSLYGTPKEEPGPGLPGQEV 35
>AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 23.8 bits (49), Expect = 2.0
Identities = 23/109 (21%), Positives = 45/109 (41%)
Frame = -2
Query: 426 LNLYREGDGIVPRFLKAINRPHYFYTSMYNSLTADRDDFDGATSKGRGGSQEAKQSLAEY 247
+N E D ++ +K Y + NSL + F +S+ ++ EY
Sbjct: 175 INKIEEHDTVLVVNIKKSGNESKKYATSSNSLRSRTHGFQHTSSRYSRERSCSRDRNREY 234
Query: 246 ASLYREYEHIEKCIKEGPYQPHLEQRKEELSKELASREEHIRKVVKEFK 100
R+YE + KE + +++ S+E RE++ K +E++
Sbjct: 235 RKKDRQYEKLHN-EKEKLLEERTSRKRYSRSRE---REQNSYKNEREYR 279
>AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 23.8 bits (49), Expect = 2.0
Identities = 23/109 (21%), Positives = 45/109 (41%)
Frame = -2
Query: 426 LNLYREGDGIVPRFLKAINRPHYFYTSMYNSLTADRDDFDGATSKGRGGSQEAKQSLAEY 247
+N E D ++ +K Y + NSL + F +S+ ++ EY
Sbjct: 186 INKIEEHDTVLVVNIKKSGNESKKYATSSNSLRSRTHGFQHTSSRYSRERSCSRDRNREY 245
Query: 246 ASLYREYEHIEKCIKEGPYQPHLEQRKEELSKELASREEHIRKVVKEFK 100
R+YE + KE + +++ S+E RE++ K +E++
Sbjct: 246 RKKDRQYEKLHN-EKEKLLEERTSRKRYSRSRE---REQNSYKNEREYR 290
>DQ869053-1|ABJ09600.1| 459|Apis mellifera capa-like receptor
protein.
Length = 459
Score = 23.4 bits (48), Expect = 2.7
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -1
Query: 220 YREMHQRRSVPA 185
YREM +R+SVPA
Sbjct: 396 YREMEKRQSVPA 407
>AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 23.4 bits (48), Expect = 2.7
Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 4/104 (3%)
Frame = -2
Query: 426 LNLYREGDGIVPRFLKAINRPHYFYTSMYNSLTADRDDFDGATSKGRGGSQEAKQSLAEY 247
+N E D ++ +K Y + NSL + F +S+ ++ EY
Sbjct: 186 INKIEEHDTVLVVNIKKSGNESKKYATSSNSLRSRTHGFQHTSSRYSRERSCSRDRNREY 245
Query: 246 ASLYREYEHI----EKCIKEGPYQPHLEQRKEELSKELASREEH 127
R+YE + EK ++E + +E K + E+
Sbjct: 246 RKKDRQYEKLHNEKEKFLEERTSHKRYSRSREREQKSYKNEREY 289
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 23.4 bits (48), Expect = 2.7
Identities = 28/147 (19%), Positives = 61/147 (41%), Gaps = 10/147 (6%)
Frame = -2
Query: 426 LNLYREGDGIVPRFLKAINRPHYFYTSMYNSLTADRDDFDGATSK-------GRGGSQEA 268
+N +E D ++ ++ Y + NSL + DF +S+ R ++E
Sbjct: 186 INKIKEHDTVLVVNIEKSGNESKKYATSSNSLRSRTHDFQHTSSRYSRERSCSRDRNREY 245
Query: 267 KQSLAEYASLYREYEH-IEKCIKEGPYQPHLEQRKEELSKELASRE--EHIRKVVKEFKA 97
K+ Y L+ E E +E+ Y E+ ++ E + R+ E ++ ++
Sbjct: 246 KEKDRRYEKLHNEKEKLLEERTSRKRYSCSREREQKSYKNENSYRKYRETSKERSRDRTE 305
Query: 96 SGDSEQPLRASASTTEDGYRHSTFKLN 16
S +P S+ + + + ++ +K N
Sbjct: 306 RERSREPKIISSLSNKTIHNNNNYKYN 332
>DQ151547-1|ABA39280.1| 405|Apis mellifera tyramine receptor
protein.
Length = 405
Score = 22.6 bits (46), Expect = 4.6
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 505 IVQRRLRSCTSCTVS 549
I RRLRS T+C VS
Sbjct: 63 ITTRRLRSVTNCFVS 77
>AY823258-1|AAX18443.1| 145|Apis mellifera pburs protein.
Length = 145
Score = 22.6 bits (46), Expect = 4.6
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = +3
Query: 564 TPCDERLSMVCRRGVAALSDHSKPAVCLRRCYAKAR 671
T C+ + + VA+ + SK C R Y K R
Sbjct: 67 TKCEGFCNSQVQPSVASTTGFSKECYCCRESYLKER 102
>AM420632-1|CAM06632.1| 145|Apis mellifera bursicon subunit beta
protein precursor protein.
Length = 145
Score = 22.6 bits (46), Expect = 4.6
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = +3
Query: 564 TPCDERLSMVCRRGVAALSDHSKPAVCLRRCYAKAR 671
T C+ + + VA+ + SK C R Y K R
Sbjct: 67 TKCEGFCNSQVQPSVASTTGFSKECYCCRESYLKER 102
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 241,696
Number of Sequences: 438
Number of extensions: 5647
Number of successful extensions: 14
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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