Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15j04
         (257 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit...    27   0.31 
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    24   3.8  
SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces ...    23   5.1  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    23   6.7  
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc...    23   8.9  

>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
           Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 27.5 bits (58), Expect = 0.31
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 132 RCNVFXVQGLVHCXXRLKIXLXNNTFSGTGL 224
           RC VF ++ L H   RLKI L    +  TG+
Sbjct: 399 RCLVFRIKYLAHRPHRLKIDLNAKQWGATGV 429


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 51  VYSVAFHVINLPVFSVVFYAIXEL 122
           +  + F  IN+ VFS+V Y +  L
Sbjct: 621 IVDLPFRFINISVFSIVLYFLTNL 644


>SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 131 MENQLRNCVEDDRKYWQVNDVKCD 60
           +ENQ +  +  D K W+V  V  D
Sbjct: 239 IENQFKYAIYSDGKAWRVQAVSID 262


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 21  ISKFLIGFGGVYSVAFHVIN 80
           + K   G+GG+YS A H I+
Sbjct: 569 VGKQSAGYGGIYSPATHGIS 588


>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 95  RKYWQVNDVKCDAIHTAKTYEEFAD 21
           R Y+ V  V+CD++ TAK   E  D
Sbjct: 295 RYYYAV--VECDSVRTAKVIYETCD 317


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 861,810
Number of Sequences: 5004
Number of extensions: 11727
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 51555950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)