Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte15j02
         (828 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0445 + 17989438-17990895                                         30   2.0  
05_07_0106 + 27723877-27723978,27724825-27725100,27726103-27727281     29   4.5  
03_01_0360 + 2815067-2816033,2816120-2816198,2816275-2816342,281...    29   4.5  
11_05_0081 - 18924353-18924462,18925068-18925187,18925569-189260...    28   7.9  
07_03_0796 + 21572131-21572204,21573427-21573482,21573580-215736...    28   7.9  

>10_08_0445 + 17989438-17990895
          Length = 485

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +1

Query: 361 AARKPVSIEDVWRFRPSNY*REPPRPAHQEASVSLSLSLDTALP 492
           A +KPV +ED WR  PS++  E P    + A ++L+    T  P
Sbjct: 295 AVKKPVVVEDPWRPPPSSWTIEAPADGDKWA-ITLATDFSTPKP 337


>05_07_0106 + 27723877-27723978,27724825-27725100,27726103-27727281
          Length = 518

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +1

Query: 427 PPRPAHQEASVSLSLSLDTALPSWIRNLPRQQFHDN 534
           P RPA    S +  LS D A  S+ + L R+ F DN
Sbjct: 4   PARPAAASVSGAFGLSADPARCSFDQTLRREDFQDN 39


>03_01_0360 +
           2815067-2816033,2816120-2816198,2816275-2816342,
           2817382-2817464,2821566-2823083
          Length = 904

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +1

Query: 427 PPRPAHQEASVSLSLSLDTALPSWIRNLPR 516
           PP+P    AS S S   D A+P+W+R LPR
Sbjct: 2   PPQPP-PAASASASAP-DPAVPAWLRGLPR 29


>11_05_0081 -
           18924353-18924462,18925068-18925187,18925569-18926086,
           18927392-18927471,18927680-18927782,18928084-18928295,
           18928392-18929210,18929331-18929444,18929935-18929983,
           18930115-18930271,18930354-18930807,18930938-18931147
          Length = 981

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 10/44 (22%), Positives = 22/44 (50%)
 Frame = -3

Query: 811 P*CSDTIKTVQRKVVFSNCINFPRNLNYDSPSSCSVTCGRNLNI 680
           P C +T+  ++ +   +  + F  NLN+    +  +T G  L++
Sbjct: 443 PVCRNTVTWIRNRAAVARVVPFDDNLNFHKVIAVGITVGAGLHV 486


>07_03_0796 +
           21572131-21572204,21573427-21573482,21573580-21573671,
           21574103-21574205,21574297-21574434,21574654-21574907
          Length = 238

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -3

Query: 697 GRNLNIEFRSIVDNFLIRLGIWHILPNSEIKDVADLKTNNTFHELK 560
           G  L+  FR +VDNFL  +G W  +    + +  D++   T H+LK
Sbjct: 198 GLKLSPWFRLVVDNFL--MGWWDHVEKGTLNEAVDME---TIHKLK 238


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,244,651
Number of Sequences: 37544
Number of extensions: 436379
Number of successful extensions: 1147
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)